Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08240

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08230 and CSW01_08235 are separated by 11 nucleotidesCSW01_08235 and CSW01_08240 overlap by 26 nucleotidesCSW01_08240 and CSW01_08245 are separated by 157 nucleotidesCSW01_08245 and CSW01_08250 are separated by 149 nucleotides CSW01_08230: CSW01_08230 - hypothetical protein, at 1,762,618 to 1,763,025 _08230 CSW01_08235: CSW01_08235 - DNA-binding response regulator, at 1,763,037 to 1,763,696 _08235 CSW01_08240: CSW01_08240 - ATP-binding protein, at 1,763,671 to 1,765,059 _08240 CSW01_08245: CSW01_08245 - 50S ribosomal protein L25, at 1,765,217 to 1,765,495 _08245 CSW01_08250: CSW01_08250 - EAL domain-containing protein, at 1,765,645 to 1,766,418 _08250 Position (kb) 1763 1764 1765 1766Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.720 kb on + strand, within CSW01_08230at 1762.785 kb on - strand, within CSW01_08230at 1762.818 kb on - strand, within CSW01_08230at 1762.978 kb on - strand, within CSW01_08230at 1763.106 kb on + strand, within CSW01_08235at 1763.142 kb on + strand, within CSW01_08235at 1763.150 kb on - strand, within CSW01_08235at 1763.150 kb on - strand, within CSW01_08235at 1763.174 kb on - strand, within CSW01_08235at 1763.305 kb on - strand, within CSW01_08235at 1763.379 kb on + strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.434 kb on + strand, within CSW01_08235at 1763.437 kb on - strand, within CSW01_08235at 1763.476 kb on + strand, within CSW01_08235at 1763.484 kb on - strand, within CSW01_08235at 1763.484 kb on - strand, within CSW01_08235at 1763.528 kb on + strand, within CSW01_08235at 1763.602 kb on + strand, within CSW01_08235at 1763.610 kb on - strand, within CSW01_08235at 1763.610 kb on - strand, within CSW01_08235at 1763.659 kb on - strandat 1763.668 kb on + strandat 1763.854 kb on + strand, within CSW01_08240at 1763.894 kb on + strand, within CSW01_08240at 1763.901 kb on - strand, within CSW01_08240at 1763.935 kb on - strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1764.041 kb on + strand, within CSW01_08240at 1764.076 kb on + strand, within CSW01_08240at 1764.393 kb on + strand, within CSW01_08240at 1764.645 kb on + strand, within CSW01_08240at 1764.645 kb on + strand, within CSW01_08240at 1764.789 kb on - strand, within CSW01_08240at 1764.791 kb on + strand, within CSW01_08240at 1764.791 kb on + strand, within CSW01_08240at 1764.791 kb on + strand, within CSW01_08240at 1764.799 kb on - strand, within CSW01_08240at 1764.799 kb on - strand, within CSW01_08240at 1764.814 kb on + strand, within CSW01_08240at 1764.822 kb on - strand, within CSW01_08240at 1764.972 kb on - strandat 1765.052 kb on - strandat 1765.688 kb on + strandat 1765.711 kb on + strandat 1765.755 kb on - strand, within CSW01_08250at 1765.755 kb on - strand, within CSW01_08250at 1765.763 kb on - strand, within CSW01_08250at 1765.765 kb on + strand, within CSW01_08250at 1765.765 kb on + strand, within CSW01_08250at 1765.765 kb on + strand, within CSW01_08250at 1765.765 kb on + strand, within CSW01_08250at 1765.772 kb on + strand, within CSW01_08250at 1765.772 kb on + strand, within CSW01_08250at 1765.772 kb on + strand, within CSW01_08250at 1765.772 kb on + strand, within CSW01_08250at 1765.777 kb on + strand, within CSW01_08250at 1765.780 kb on - strand, within CSW01_08250at 1765.831 kb on + strand, within CSW01_08250at 1765.845 kb on + strand, within CSW01_08250at 1765.850 kb on - strand, within CSW01_08250at 1765.964 kb on + strand, within CSW01_08250at 1766.017 kb on - strand, within CSW01_08250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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1,762,696 - CSW01_08230 0.19 -1.1
1,762,696 - CSW01_08230 0.19 -0.9
1,762,696 - CSW01_08230 0.19 +1.3
1,762,696 - CSW01_08230 0.19 +0.3
1,762,720 + CSW01_08230 0.25 -1.3
1,762,785 - CSW01_08230 0.41 -1.4
1,762,818 - CSW01_08230 0.49 +0.3
1,762,978 - CSW01_08230 0.88 -0.2
1,763,106 + CSW01_08235 0.10 +1.4
1,763,142 + CSW01_08235 0.16 +0.1
1,763,150 - CSW01_08235 0.17 +0.5
1,763,150 - CSW01_08235 0.17 -1.9
1,763,174 - CSW01_08235 0.21 -0.4
1,763,305 - CSW01_08235 0.41 -0.8
1,763,379 + CSW01_08235 0.52 +0.1
1,763,387 - CSW01_08235 0.53 +0.3
1,763,387 - CSW01_08235 0.53 +0.5
1,763,387 - CSW01_08235 0.53 +0.3
1,763,434 + CSW01_08235 0.60 -0.1
1,763,437 - CSW01_08235 0.61 -0.3
1,763,476 + CSW01_08235 0.67 +0.6
1,763,484 - CSW01_08235 0.68 +0.1
1,763,484 - CSW01_08235 0.68 +0.4
1,763,528 + CSW01_08235 0.74 +0.2
1,763,602 + CSW01_08235 0.86 +0.0
1,763,610 - CSW01_08235 0.87 +0.5
1,763,610 - CSW01_08235 0.87 +0.8
1,763,659 - +0.2
1,763,668 + -0.4
1,763,854 + CSW01_08240 0.13 +1.3
1,763,894 + CSW01_08240 0.16 +0.3
1,763,901 - CSW01_08240 0.17 -0.7
1,763,935 - CSW01_08240 0.19 +0.3
1,763,937 + CSW01_08240 0.19 -2.8
1,763,937 + CSW01_08240 0.19 +0.9
1,763,937 + CSW01_08240 0.19 +0.3
1,763,945 - CSW01_08240 0.20 +1.9
1,763,945 - CSW01_08240 0.20 +0.3
1,763,945 - CSW01_08240 0.20 -0.3
1,763,945 - CSW01_08240 0.20 -1.0
1,764,041 + CSW01_08240 0.27 +1.9
1,764,076 + CSW01_08240 0.29 -1.3
1,764,393 + CSW01_08240 0.52 +0.3
1,764,645 + CSW01_08240 0.70 +1.3
1,764,645 + CSW01_08240 0.70 -1.7
1,764,789 - CSW01_08240 0.80 -0.7
1,764,791 + CSW01_08240 0.81 -2.8
1,764,791 + CSW01_08240 0.81 +1.3
1,764,791 + CSW01_08240 0.81 -0.4
1,764,799 - CSW01_08240 0.81 +0.3
1,764,799 - CSW01_08240 0.81 -1.7
1,764,814 + CSW01_08240 0.82 +0.3
1,764,822 - CSW01_08240 0.83 +0.3
1,764,972 - +0.3
1,765,052 - +0.5
1,765,688 + +0.3
1,765,711 + +1.5
1,765,755 - CSW01_08250 0.14 -0.0
1,765,755 - CSW01_08250 0.14 +0.6
1,765,763 - CSW01_08250 0.15 +0.0
1,765,765 + CSW01_08250 0.16 +0.4
1,765,765 + CSW01_08250 0.16 +0.0
1,765,765 + CSW01_08250 0.16 +0.2
1,765,765 + CSW01_08250 0.16 +1.1
1,765,772 + CSW01_08250 0.16 +0.9
1,765,772 + CSW01_08250 0.16 +0.9
1,765,772 + CSW01_08250 0.16 +0.5
1,765,772 + CSW01_08250 0.16 -1.0
1,765,777 + CSW01_08250 0.17 -0.3
1,765,780 - CSW01_08250 0.17 +0.2
1,765,831 + CSW01_08250 0.24 +0.0
1,765,845 + CSW01_08250 0.26 -0.2
1,765,850 - CSW01_08250 0.26 -2.0
1,765,964 + CSW01_08250 0.41 +0.1
1,766,017 - CSW01_08250 0.48 -0.2

Or see this region's nucleotide sequence