Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04650

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04645 and CSW01_04650 are separated by 235 nucleotidesCSW01_04650 and CSW01_04655 are separated by 64 nucleotides CSW01_04645: CSW01_04645 - methionine import ATP-binding protein MetN, at 965,445 to 966,479 _04645 CSW01_04650: CSW01_04650 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 966,715 to 967,275 _04650 CSW01_04655: CSW01_04655 - HTH-type transcriptional regulator TreR, at 967,340 to 968,290 _04655 Position (kb) 966 967 968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 965.787 kb on - strand, within CSW01_04645at 965.833 kb on - strand, within CSW01_04645at 965.833 kb on - strand, within CSW01_04645at 965.857 kb on - strand, within CSW01_04645at 965.906 kb on + strand, within CSW01_04645at 965.914 kb on - strand, within CSW01_04645at 965.976 kb on + strand, within CSW01_04645at 965.991 kb on + strand, within CSW01_04645at 966.257 kb on - strand, within CSW01_04645at 966.275 kb on + strand, within CSW01_04645at 966.283 kb on - strand, within CSW01_04645at 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.493 kb on - strandat 966.495 kb on + strandat 966.501 kb on - strandat 966.942 kb on - strand, within CSW01_04650at 967.040 kb on + strand, within CSW01_04650at 967.048 kb on - strand, within CSW01_04650at 967.185 kb on + strand, within CSW01_04650at 967.251 kb on - strandat 967.283 kb on + strandat 967.377 kb on + strandat 967.460 kb on - strand, within CSW01_04655at 967.529 kb on + strand, within CSW01_04655at 967.579 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.676 kb on - strand, within CSW01_04655at 967.717 kb on - strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.756 kb on + strand, within CSW01_04655at 967.757 kb on - strand, within CSW01_04655at 967.764 kb on + strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.776 kb on - strand, within CSW01_04655at 967.823 kb on - strand, within CSW01_04655at 967.851 kb on - strand, within CSW01_04655at 967.910 kb on + strand, within CSW01_04655at 967.929 kb on - strand, within CSW01_04655at 968.080 kb on + strand, within CSW01_04655at 968.133 kb on + strand, within CSW01_04655at 968.241 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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965,787 - CSW01_04645 0.33 -1.8
965,833 - CSW01_04645 0.37 +0.8
965,833 - CSW01_04645 0.37 +0.9
965,857 - CSW01_04645 0.40 -0.1
965,906 + CSW01_04645 0.45 +1.0
965,914 - CSW01_04645 0.45 -0.1
965,976 + CSW01_04645 0.51 -0.2
965,991 + CSW01_04645 0.53 +0.1
966,257 - CSW01_04645 0.78 +0.5
966,275 + CSW01_04645 0.80 -1.2
966,283 - CSW01_04645 0.81 -1.4
966,485 + +1.1
966,485 + -0.4
966,485 + +0.1
966,485 + -1.7
966,485 + +0.2
966,485 + +0.6
966,485 + +1.0
966,485 + -1.4
966,485 + -0.2
966,493 - -2.2
966,495 + -1.5
966,501 - -0.0
966,942 - CSW01_04650 0.40 -2.4
967,040 + CSW01_04650 0.58 -0.1
967,048 - CSW01_04650 0.59 +0.2
967,185 + CSW01_04650 0.84 -0.6
967,251 - +0.4
967,283 + +0.1
967,377 + +0.1
967,460 - CSW01_04655 0.13 -0.1
967,529 + CSW01_04655 0.20 +0.3
967,579 + CSW01_04655 0.25 +1.1
967,584 + CSW01_04655 0.26 +0.3
967,584 + CSW01_04655 0.26 +0.1
967,584 + CSW01_04655 0.26 -0.4
967,592 - CSW01_04655 0.26 +1.2
967,592 - CSW01_04655 0.26 +1.0
967,592 - CSW01_04655 0.26 -0.4
967,592 - CSW01_04655 0.26 +1.0
967,592 - CSW01_04655 0.26 +0.4
967,676 - CSW01_04655 0.35 +0.4
967,717 - CSW01_04655 0.40 +1.0
967,739 + CSW01_04655 0.42 +0.1
967,739 + CSW01_04655 0.42 -0.7
967,756 + CSW01_04655 0.44 +0.6
967,757 - CSW01_04655 0.44 +0.5
967,764 + CSW01_04655 0.45 +0.6
967,769 - CSW01_04655 0.45 +0.7
967,769 - CSW01_04655 0.45 +0.6
967,776 - CSW01_04655 0.46 +0.1
967,823 - CSW01_04655 0.51 -4.2
967,851 - CSW01_04655 0.54 -0.0
967,910 + CSW01_04655 0.60 +0.1
967,929 - CSW01_04655 0.62 +0.5
968,080 + CSW01_04655 0.78 +0.0
968,133 + CSW01_04655 0.83 +1.9
968,241 + -1.2
968,246 + +3.0
968,246 + +0.8
968,246 + -0.2
968,246 + +0.1
968,246 + +0.4
968,246 + -0.1
968,246 + +0.6
968,246 + -1.1
968,246 + -0.9
968,246 + +0.7
968,254 - +1.5
968,254 - +0.0
968,254 - -1.4
968,254 - +0.1
968,254 - +2.8
968,254 - +0.3

Or see this region's nucleotide sequence