Experiment: LB_Aerobic_180MIN_ZN14A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04505 and CSW01_04510 are separated by 134 nucleotides CSW01_04510 and CSW01_04515 overlap by 4 nucleotides CSW01_04515 and CSW01_04520 are separated by 200 nucleotides CSW01_04520 and CSW01_04525 are separated by 65 nucleotides CSW01_04525 and CSW01_04530 overlap by 4 nucleotides
CSW01_04505: CSW01_04505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 938,534 to 939,229
_04505
CSW01_04510: CSW01_04510 - 50S ribosomal protein L31 type B, at 939,364 to 939,621
_04510
CSW01_04515: CSW01_04515 - 50S ribosomal protein L36, at 939,618 to 939,743
_04515
CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530
_04520
CSW01_04525: CSW01_04525 - DUF188 domain-containing protein, at 941,596 to 942,045
_04525
CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341
_04530
Position (kb) 939
940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 939.037 kb on + strand, within CSW01_04505 at 939.045 kb on - strand, within CSW01_04505 at 939.077 kb on - strand, within CSW01_04505 at 939.105 kb on + strand, within CSW01_04505 at 939.115 kb on - strand, within CSW01_04505 at 939.115 kb on - strand, within CSW01_04505 at 939.440 kb on + strand, within CSW01_04510 at 939.440 kb on + strand, within CSW01_04510 at 939.466 kb on + strand, within CSW01_04510 at 939.474 kb on - strand, within CSW01_04510 at 939.526 kb on - strand, within CSW01_04510 at 939.526 kb on - strand, within CSW01_04510 at 939.536 kb on - strand, within CSW01_04510 at 939.634 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.920 kb on + strand at 939.938 kb on + strand at 939.946 kb on - strand at 939.946 kb on - strand at 940.039 kb on - strand at 940.039 kb on - strand at 940.104 kb on + strand, within CSW01_04520 at 940.118 kb on + strand, within CSW01_04520 at 940.194 kb on - strand, within CSW01_04520 at 940.200 kb on + strand, within CSW01_04520 at 940.200 kb on + strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.234 kb on - strand, within CSW01_04520 at 940.250 kb on + strand, within CSW01_04520 at 940.250 kb on + strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.304 kb on + strand, within CSW01_04520 at 940.312 kb on - strand, within CSW01_04520 at 940.312 kb on - strand, within CSW01_04520 at 940.341 kb on - strand, within CSW01_04520 at 940.352 kb on - strand, within CSW01_04520 at 940.414 kb on - strand, within CSW01_04520 at 940.445 kb on - strand, within CSW01_04520 at 940.469 kb on - strand, within CSW01_04520 at 940.469 kb on - strand, within CSW01_04520 at 940.531 kb on + strand, within CSW01_04520 at 940.608 kb on + strand, within CSW01_04520 at 940.645 kb on - strand, within CSW01_04520 at 940.692 kb on + strand, within CSW01_04520 at 940.725 kb on - strand, within CSW01_04520 at 940.739 kb on + strand, within CSW01_04520 at 940.739 kb on + strand, within CSW01_04520 at 940.739 kb on + strand, within CSW01_04520 at 940.781 kb on + strand, within CSW01_04520 at 940.786 kb on + strand, within CSW01_04520 at 940.794 kb on - strand, within CSW01_04520 at 940.869 kb on - strand, within CSW01_04520 at 940.870 kb on + strand, within CSW01_04520 at 940.922 kb on - strand, within CSW01_04520 at 940.944 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.949 kb on + strand, within CSW01_04520 at 940.957 kb on - strand, within CSW01_04520 at 940.957 kb on - strand, within CSW01_04520 at 940.957 kb on - strand, within CSW01_04520 at 940.957 kb on - strand, within CSW01_04520 at 941.031 kb on + strand, within CSW01_04520 at 941.035 kb on - strand, within CSW01_04520 at 941.151 kb on - strand, within CSW01_04520 at 941.151 kb on - strand, within CSW01_04520 at 941.151 kb on - strand, within CSW01_04520 at 941.153 kb on + strand, within CSW01_04520 at 941.274 kb on + strand, within CSW01_04520 at 941.274 kb on + strand, within CSW01_04520 at 941.329 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.368 kb on + strand, within CSW01_04520 at 941.447 kb on + strand at 941.469 kb on - strand at 941.601 kb on - strand at 941.748 kb on + strand, within CSW01_04525 at 941.753 kb on + strand, within CSW01_04525 at 941.836 kb on - strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.969 kb on + strand, within CSW01_04525 at 941.970 kb on - strand, within CSW01_04525 at 942.032 kb on + strand at 942.032 kb on + strand at 942.063 kb on - strand at 942.088 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.180 kb on + strand, within CSW01_04530 at 942.225 kb on + strand, within CSW01_04530 at 942.225 kb on + strand, within CSW01_04530 at 942.250 kb on + strand, within CSW01_04530 at 942.250 kb on + strand, within CSW01_04530 at 942.328 kb on + strand at 942.336 kb on - strand at 942.371 kb on - strand at 942.407 kb on + strand at 942.428 kb on - strand at 942.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A remove 939,037 + CSW01_04505 0.72 +0.3 939,045 - CSW01_04505 0.73 -0.1 939,077 - CSW01_04505 0.78 -2.9 939,105 + CSW01_04505 0.82 +1.6 939,115 - CSW01_04505 0.83 -0.2 939,115 - CSW01_04505 0.83 +0.5 939,440 + CSW01_04510 0.29 +0.3 939,440 + CSW01_04510 0.29 +0.1 939,466 + CSW01_04510 0.40 -0.4 939,474 - CSW01_04510 0.43 -1.5 939,526 - CSW01_04510 0.63 -0.2 939,526 - CSW01_04510 0.63 +0.2 939,536 - CSW01_04510 0.67 -0.6 939,634 - CSW01_04515 0.13 -0.1 939,730 - CSW01_04515 0.89 +0.5 939,730 - CSW01_04515 0.89 -0.6 939,730 - CSW01_04515 0.89 +0.5 939,730 - CSW01_04515 0.89 -0.6 939,920 + +0.6 939,938 + +0.2 939,946 - +1.2 939,946 - -0.3 940,039 - -0.0 940,039 - +0.2 940,104 + CSW01_04520 0.10 -0.5 940,118 + CSW01_04520 0.11 +1.2 940,194 - CSW01_04520 0.16 +0.5 940,200 + CSW01_04520 0.16 +0.3 940,200 + CSW01_04520 0.16 -1.2 940,208 - CSW01_04520 0.17 -0.3 940,208 - CSW01_04520 0.17 +0.4 940,208 - CSW01_04520 0.17 +0.2 940,234 - CSW01_04520 0.18 -1.9 940,250 + CSW01_04520 0.19 +1.2 940,250 + CSW01_04520 0.19 +0.7 940,258 - CSW01_04520 0.20 +0.7 940,258 - CSW01_04520 0.20 -0.1 940,258 - CSW01_04520 0.20 +0.5 940,304 + CSW01_04520 0.23 +0.3 940,312 - CSW01_04520 0.23 +0.5 940,312 - CSW01_04520 0.23 +1.6 940,341 - CSW01_04520 0.25 +0.2 940,352 - CSW01_04520 0.26 -0.1 940,414 - CSW01_04520 0.30 +0.4 940,445 - CSW01_04520 0.32 +0.6 940,469 - CSW01_04520 0.33 +0.3 940,469 - CSW01_04520 0.33 -0.5 940,531 + CSW01_04520 0.37 +0.2 940,608 + CSW01_04520 0.42 -0.5 940,645 - CSW01_04520 0.44 -1.2 940,692 + CSW01_04520 0.47 +0.0 940,725 - CSW01_04520 0.49 +0.2 940,739 + CSW01_04520 0.50 -0.1 940,739 + CSW01_04520 0.50 -1.5 940,739 + CSW01_04520 0.50 +1.0 940,781 + CSW01_04520 0.53 -0.8 940,786 + CSW01_04520 0.53 +0.0 940,794 - CSW01_04520 0.54 -0.2 940,869 - CSW01_04520 0.58 +1.2 940,870 + CSW01_04520 0.58 +1.2 940,922 - CSW01_04520 0.62 -0.5 940,944 + CSW01_04520 0.63 -0.2 940,949 + CSW01_04520 0.63 -0.6 940,949 + CSW01_04520 0.63 -0.4 940,949 + CSW01_04520 0.63 -0.8 940,949 + CSW01_04520 0.63 +1.3 940,949 + CSW01_04520 0.63 +0.6 940,949 + CSW01_04520 0.63 +0.4 940,949 + CSW01_04520 0.63 +0.0 940,949 + CSW01_04520 0.63 +1.5 940,957 - CSW01_04520 0.64 +0.7 940,957 - CSW01_04520 0.64 +2.1 940,957 - CSW01_04520 0.64 -0.5 940,957 - CSW01_04520 0.64 -1.0 941,031 + CSW01_04520 0.68 -0.2 941,035 - CSW01_04520 0.69 +1.0 941,151 - CSW01_04520 0.76 -1.0 941,151 - CSW01_04520 0.76 +1.1 941,151 - CSW01_04520 0.76 -1.7 941,153 + CSW01_04520 0.76 +0.2 941,274 + CSW01_04520 0.84 +0.4 941,274 + CSW01_04520 0.84 -0.9 941,329 - CSW01_04520 0.87 +0.2 941,354 - CSW01_04520 0.89 +0.3 941,354 - CSW01_04520 0.89 +0.2 941,354 - CSW01_04520 0.89 +0.6 941,368 + CSW01_04520 0.90 -0.2 941,447 + -0.2 941,469 - -1.0 941,601 - -0.3 941,748 + CSW01_04525 0.34 +0.1 941,753 + CSW01_04525 0.35 -0.4 941,836 - CSW01_04525 0.53 -0.5 941,896 + CSW01_04525 0.67 -0.6 941,896 + CSW01_04525 0.67 +0.1 941,896 + CSW01_04525 0.67 -0.2 941,969 + CSW01_04525 0.83 -0.3 941,970 - CSW01_04525 0.83 +0.1 942,032 + -0.2 942,032 + +0.2 942,063 - -0.1 942,088 + CSW01_04530 0.15 -1.0 942,131 + CSW01_04530 0.30 -0.1 942,131 + CSW01_04530 0.30 +2.1 942,131 + CSW01_04530 0.30 -0.3 942,139 - CSW01_04530 0.32 +0.4 942,139 - CSW01_04530 0.32 +0.2 942,139 - CSW01_04530 0.32 +0.6 942,139 - CSW01_04530 0.32 +1.7 942,139 - CSW01_04530 0.32 +0.8 942,139 - CSW01_04530 0.32 -0.1 942,139 - CSW01_04530 0.32 -0.2 942,139 - CSW01_04530 0.32 +0.6 942,139 - CSW01_04530 0.32 -0.1 942,180 + CSW01_04530 0.46 -1.2 942,225 + CSW01_04530 0.61 +0.3 942,225 + CSW01_04530 0.61 +0.3 942,250 + CSW01_04530 0.69 -0.0 942,250 + CSW01_04530 0.69 -0.9 942,328 + -0.1 942,336 - -0.4 942,371 - -0.8 942,407 + +0.0 942,428 - -0.8 942,525 + +2.1
Or see this region's nucleotide sequence