Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04470

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04460 and CSW01_04465 are separated by 100 nucleotidesCSW01_04465 and CSW01_04470 overlap by 4 nucleotidesCSW01_04470 and CSW01_04475 are separated by 174 nucleotidesCSW01_04475 and CSW01_04480 are separated by 110 nucleotidesCSW01_04480 and CSW01_04485 are separated by 5 nucleotides CSW01_04460: CSW01_04460 - lytic transglycosylase F, at 928,686 to 930,278 _04460 CSW01_04465: CSW01_04465 - hypothetical protein, at 930,379 to 930,591 _04465 CSW01_04470: CSW01_04470 - phosphoribosylformylglycinamidine synthase, at 930,588 to 934,481 _04470 CSW01_04475: CSW01_04475 - IS200/IS605 family transposase IS1004, at 934,656 to 935,093 _04475 CSW01_04480: CSW01_04480 - DUF4250 domain-containing protein, at 935,204 to 935,395 _04480 CSW01_04485: CSW01_04485 - hypothetical protein, at 935,401 to 935,604 _04485 Position (kb) 930 931 932 933 934 935Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 929.605 kb on + strand, within CSW01_04460at 929.605 kb on + strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.638 kb on + strand, within CSW01_04460at 929.638 kb on - strand, within CSW01_04460at 929.641 kb on - strand, within CSW01_04460at 929.646 kb on - strand, within CSW01_04460at 929.655 kb on + strand, within CSW01_04460at 929.709 kb on - strand, within CSW01_04460at 929.836 kb on - strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.910 kb on + strand, within CSW01_04460at 929.942 kb on + strand, within CSW01_04460at 929.951 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.978 kb on - strand, within CSW01_04460at 930.005 kb on + strand, within CSW01_04460at 930.089 kb on - strand, within CSW01_04460at 930.098 kb on - strand, within CSW01_04460at 930.219 kb on - strandat 930.238 kb on - strandat 930.296 kb on + strandat 930.296 kb on + strandat 930.303 kb on + strandat 930.304 kb on - strandat 930.348 kb on + strandat 930.484 kb on - strand, within CSW01_04465at 930.503 kb on - strand, within CSW01_04465at 930.607 kb on + strandat 930.646 kb on - strandat 930.701 kb on - strandat 930.710 kb on + strandat 930.710 kb on + strandat 930.718 kb on - strandat 930.736 kb on + strandat 930.744 kb on - strandat 930.763 kb on + strandat 930.763 kb on + strandat 930.792 kb on - strandat 930.832 kb on - strandat 930.833 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.880 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.915 kb on + strandat 930.939 kb on + strandat 930.964 kb on + strandat 931.040 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.135 kb on - strand, within CSW01_04470at 931.158 kb on + strand, within CSW01_04470at 931.168 kb on + strand, within CSW01_04470at 931.195 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.275 kb on - strand, within CSW01_04470at 931.286 kb on + strand, within CSW01_04470at 931.306 kb on - strand, within CSW01_04470at 931.326 kb on - strand, within CSW01_04470at 931.379 kb on - strand, within CSW01_04470at 931.421 kb on + strand, within CSW01_04470at 931.508 kb on + strand, within CSW01_04470at 931.516 kb on - strand, within CSW01_04470at 931.578 kb on + strand, within CSW01_04470at 931.676 kb on + strand, within CSW01_04470at 931.676 kb on + strand, within CSW01_04470at 931.684 kb on - strand, within CSW01_04470at 931.710 kb on + strand, within CSW01_04470at 931.710 kb on + strand, within CSW01_04470at 931.710 kb on + strand, within CSW01_04470at 931.718 kb on - strand, within CSW01_04470at 931.788 kb on + strand, within CSW01_04470at 931.797 kb on - strand, within CSW01_04470at 931.841 kb on - strand, within CSW01_04470at 931.844 kb on + strand, within CSW01_04470at 931.957 kb on + strand, within CSW01_04470at 931.957 kb on + strand, within CSW01_04470at 931.957 kb on + strand, within CSW01_04470at 931.965 kb on - strand, within CSW01_04470at 931.965 kb on - strand, within CSW01_04470at 932.029 kb on + strand, within CSW01_04470at 932.029 kb on + strand, within CSW01_04470at 932.037 kb on - strand, within CSW01_04470at 932.111 kb on + strand, within CSW01_04470at 932.111 kb on + strand, within CSW01_04470at 932.111 kb on + strand, within CSW01_04470at 932.111 kb on + strand, within CSW01_04470at 932.119 kb on - strand, within CSW01_04470at 932.281 kb on + strand, within CSW01_04470at 932.283 kb on + strand, within CSW01_04470at 932.321 kb on - strand, within CSW01_04470at 932.460 kb on + strand, within CSW01_04470at 932.468 kb on - strand, within CSW01_04470at 932.468 kb on - strand, within CSW01_04470at 932.468 kb on - strand, within CSW01_04470at 932.483 kb on + strand, within CSW01_04470at 932.484 kb on - strand, within CSW01_04470at 932.489 kb on - strand, within CSW01_04470at 932.672 kb on + strand, within CSW01_04470at 932.672 kb on + strand, within CSW01_04470at 932.672 kb on + strand, within CSW01_04470at 932.672 kb on + strand, within CSW01_04470at 932.674 kb on + strand, within CSW01_04470at 932.680 kb on - strand, within CSW01_04470at 932.680 kb on - strand, within CSW01_04470at 932.680 kb on - strand, within CSW01_04470at 932.684 kb on + strand, within CSW01_04470at 932.702 kb on + strand, within CSW01_04470at 932.844 kb on - strand, within CSW01_04470at 932.846 kb on + strand, within CSW01_04470at 932.854 kb on - strand, within CSW01_04470at 932.869 kb on + strand, within CSW01_04470at 932.876 kb on + strand, within CSW01_04470at 932.881 kb on + strand, within CSW01_04470at 932.884 kb on - strand, within CSW01_04470at 932.884 kb on - strand, within CSW01_04470at 932.884 kb on - strand, within CSW01_04470at 932.884 kb on - strand, within CSW01_04470at 932.889 kb on - strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.891 kb on + strand, within CSW01_04470at 932.899 kb on - strand, within CSW01_04470at 932.899 kb on - strand, within CSW01_04470at 932.899 kb on - strand, within CSW01_04470at 933.034 kb on + strand, within CSW01_04470at 933.034 kb on + strand, within CSW01_04470at 933.042 kb on - strand, within CSW01_04470at 933.042 kb on - strand, within CSW01_04470at 933.046 kb on + strand, within CSW01_04470at 933.054 kb on - strand, within CSW01_04470at 933.054 kb on - strand, within CSW01_04470at 933.159 kb on + strand, within CSW01_04470at 933.179 kb on + strand, within CSW01_04470at 933.179 kb on + strand, within CSW01_04470at 933.242 kb on + strand, within CSW01_04470at 933.304 kb on - strand, within CSW01_04470at 933.307 kb on - strand, within CSW01_04470at 933.361 kb on - strand, within CSW01_04470at 933.406 kb on - strand, within CSW01_04470at 933.406 kb on - strand, within CSW01_04470at 933.428 kb on - strand, within CSW01_04470at 933.433 kb on + strand, within CSW01_04470at 933.441 kb on - strand, within CSW01_04470at 933.514 kb on - strand, within CSW01_04470at 933.521 kb on + strand, within CSW01_04470at 933.521 kb on + strand, within CSW01_04470at 933.600 kb on + strand, within CSW01_04470at 933.608 kb on - strand, within CSW01_04470at 933.636 kb on - strand, within CSW01_04470at 933.692 kb on - strand, within CSW01_04470at 933.745 kb on + strand, within CSW01_04470at 933.768 kb on + strand, within CSW01_04470at 933.768 kb on + strand, within CSW01_04470at 933.776 kb on - strand, within CSW01_04470at 933.795 kb on + strand, within CSW01_04470at 933.836 kb on + strand, within CSW01_04470at 933.883 kb on + strand, within CSW01_04470at 933.883 kb on + strand, within CSW01_04470at 933.985 kb on + strand, within CSW01_04470at 934.003 kb on - strand, within CSW01_04470at 934.006 kb on + strand, within CSW01_04470at 934.014 kb on - strand, within CSW01_04470at 934.015 kb on + strand, within CSW01_04470at 934.015 kb on + strand, within CSW01_04470at 934.016 kb on + strand, within CSW01_04470at 934.016 kb on + strand, within CSW01_04470at 934.023 kb on - strand, within CSW01_04470at 934.023 kb on - strand, within CSW01_04470at 934.084 kb on + strand, within CSW01_04470at 934.095 kb on + strandat 934.105 kb on - strandat 934.190 kb on - strandat 934.284 kb on - strandat 934.288 kb on - strandat 934.289 kb on - strandat 934.337 kb on - strandat 934.490 kb on + strandat 935.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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929,605 + CSW01_04460 0.58 +0.6
929,605 + CSW01_04460 0.58 +1.3
929,613 - CSW01_04460 0.58 -0.4
929,613 - CSW01_04460 0.58 -1.4
929,630 + CSW01_04460 0.59 +0.2
929,630 + CSW01_04460 0.59 -2.0
929,638 + CSW01_04460 0.60 -0.6
929,638 - CSW01_04460 0.60 -0.6
929,641 - CSW01_04460 0.60 -0.5
929,646 - CSW01_04460 0.60 +0.6
929,655 + CSW01_04460 0.61 -0.9
929,709 - CSW01_04460 0.64 -2.6
929,836 - CSW01_04460 0.72 +0.0
929,846 + CSW01_04460 0.73 +0.2
929,846 + CSW01_04460 0.73 -0.2
929,846 + CSW01_04460 0.73 -0.1
929,854 - CSW01_04460 0.73 +0.2
929,854 - CSW01_04460 0.73 -0.9
929,854 - CSW01_04460 0.73 +0.6
929,854 - CSW01_04460 0.73 -0.6
929,854 - CSW01_04460 0.73 -0.8
929,910 + CSW01_04460 0.77 +0.6
929,942 + CSW01_04460 0.79 -0.2
929,951 + CSW01_04460 0.79 +0.8
929,952 + CSW01_04460 0.79 -1.2
929,952 + CSW01_04460 0.79 -0.3
929,952 + CSW01_04460 0.79 +0.2
929,952 + CSW01_04460 0.79 -1.8
929,952 + CSW01_04460 0.79 -0.1
929,952 + CSW01_04460 0.79 -0.7
929,960 - CSW01_04460 0.80 +0.6
929,960 - CSW01_04460 0.80 -2.4
929,960 - CSW01_04460 0.80 -0.2
929,978 - CSW01_04460 0.81 +0.7
930,005 + CSW01_04460 0.83 +0.6
930,089 - CSW01_04460 0.88 +0.3
930,098 - CSW01_04460 0.89 +0.3
930,219 - +0.1
930,238 - +0.6
930,296 + +0.3
930,296 + -0.2
930,303 + -0.4
930,304 - -0.0
930,348 + +0.2
930,484 - CSW01_04465 0.49 -0.2
930,503 - CSW01_04465 0.58 -0.4
930,607 + +0.6
930,646 - -0.8
930,701 - +0.2
930,710 + -0.7
930,710 + -0.0
930,718 - +0.2
930,736 + +0.6
930,744 - -0.9
930,763 + -0.0
930,763 + +0.6
930,792 - -0.3
930,832 - +0.4
930,833 + -0.7
930,872 + +0.2
930,872 + -0.5
930,872 + -0.9
930,874 + -0.9
930,874 + -1.7
930,874 + -0.4
930,874 + -0.2
930,880 - -0.5
930,882 - +0.4
930,882 - -0.9
930,882 - -0.7
930,882 - -0.6
930,882 - -0.3
930,915 + +0.3
930,939 + +1.3
930,964 + +0.1
931,040 - CSW01_04470 0.12 +0.3
931,047 - CSW01_04470 0.12 +0.9
931,047 - CSW01_04470 0.12 +0.1
931,135 - CSW01_04470 0.14 +0.3
931,158 + CSW01_04470 0.15 +0.5
931,168 + CSW01_04470 0.15 +0.2
931,195 + CSW01_04470 0.16 +0.3
931,220 + CSW01_04470 0.16 -0.9
931,220 + CSW01_04470 0.16 -1.3
931,275 - CSW01_04470 0.18 -0.2
931,286 + CSW01_04470 0.18 -1.1
931,306 - CSW01_04470 0.18 -0.3
931,326 - CSW01_04470 0.19 +0.5
931,379 - CSW01_04470 0.20 -0.3
931,421 + CSW01_04470 0.21 +0.6
931,508 + CSW01_04470 0.24 +1.3
931,516 - CSW01_04470 0.24 -0.1
931,578 + CSW01_04470 0.25 +0.1
931,676 + CSW01_04470 0.28 -0.3
931,676 + CSW01_04470 0.28 -0.0
931,684 - CSW01_04470 0.28 -1.6
931,710 + CSW01_04470 0.29 -0.1
931,710 + CSW01_04470 0.29 +0.4
931,710 + CSW01_04470 0.29 -0.4
931,718 - CSW01_04470 0.29 +0.4
931,788 + CSW01_04470 0.31 +0.2
931,797 - CSW01_04470 0.31 -0.4
931,841 - CSW01_04470 0.32 +0.3
931,844 + CSW01_04470 0.32 -2.2
931,957 + CSW01_04470 0.35 +0.5
931,957 + CSW01_04470 0.35 -0.3
931,957 + CSW01_04470 0.35 +0.6
931,965 - CSW01_04470 0.35 -0.4
931,965 - CSW01_04470 0.35 -1.2
932,029 + CSW01_04470 0.37 -0.2
932,029 + CSW01_04470 0.37 -0.2
932,037 - CSW01_04470 0.37 -0.2
932,111 + CSW01_04470 0.39 +0.1
932,111 + CSW01_04470 0.39 +0.2
932,111 + CSW01_04470 0.39 -0.2
932,111 + CSW01_04470 0.39 +0.1
932,119 - CSW01_04470 0.39 +0.6
932,281 + CSW01_04470 0.43 -0.3
932,283 + CSW01_04470 0.44 +0.9
932,321 - CSW01_04470 0.45 +2.0
932,460 + CSW01_04470 0.48 -0.6
932,468 - CSW01_04470 0.48 +0.5
932,468 - CSW01_04470 0.48 -0.6
932,468 - CSW01_04470 0.48 +0.2
932,483 + CSW01_04470 0.49 -1.9
932,484 - CSW01_04470 0.49 -1.5
932,489 - CSW01_04470 0.49 +1.2
932,672 + CSW01_04470 0.54 +0.2
932,672 + CSW01_04470 0.54 +0.6
932,672 + CSW01_04470 0.54 +0.2
932,672 + CSW01_04470 0.54 -0.1
932,674 + CSW01_04470 0.54 +0.1
932,680 - CSW01_04470 0.54 +0.6
932,680 - CSW01_04470 0.54 +0.4
932,680 - CSW01_04470 0.54 +0.2
932,684 + CSW01_04470 0.54 -0.2
932,702 + CSW01_04470 0.54 -0.5
932,844 - CSW01_04470 0.58 -0.6
932,846 + CSW01_04470 0.58 -0.6
932,854 - CSW01_04470 0.58 -0.9
932,869 + CSW01_04470 0.59 -0.4
932,876 + CSW01_04470 0.59 -0.4
932,881 + CSW01_04470 0.59 +0.6
932,884 - CSW01_04470 0.59 -0.4
932,884 - CSW01_04470 0.59 -1.0
932,884 - CSW01_04470 0.59 +0.1
932,884 - CSW01_04470 0.59 -0.1
932,889 - CSW01_04470 0.59 -0.1
932,891 + CSW01_04470 0.59 -0.5
932,891 + CSW01_04470 0.59 +0.6
932,891 + CSW01_04470 0.59 +1.0
932,891 + CSW01_04470 0.59 -0.2
932,891 + CSW01_04470 0.59 -0.5
932,891 + CSW01_04470 0.59 +0.7
932,899 - CSW01_04470 0.59 -0.2
932,899 - CSW01_04470 0.59 +0.1
932,899 - CSW01_04470 0.59 +0.3
933,034 + CSW01_04470 0.63 -0.4
933,034 + CSW01_04470 0.63 -0.0
933,042 - CSW01_04470 0.63 -0.2
933,042 - CSW01_04470 0.63 -2.6
933,046 + CSW01_04470 0.63 -0.1
933,054 - CSW01_04470 0.63 -0.1
933,054 - CSW01_04470 0.63 +0.5
933,159 + CSW01_04470 0.66 -0.5
933,179 + CSW01_04470 0.67 -0.1
933,179 + CSW01_04470 0.67 -0.3
933,242 + CSW01_04470 0.68 +0.9
933,304 - CSW01_04470 0.70 +0.2
933,307 - CSW01_04470 0.70 +1.5
933,361 - CSW01_04470 0.71 +0.6
933,406 - CSW01_04470 0.72 -0.1
933,406 - CSW01_04470 0.72 -0.5
933,428 - CSW01_04470 0.73 -0.0
933,433 + CSW01_04470 0.73 -1.1
933,441 - CSW01_04470 0.73 -0.9
933,514 - CSW01_04470 0.75 +0.4
933,521 + CSW01_04470 0.75 +0.3
933,521 + CSW01_04470 0.75 +0.8
933,600 + CSW01_04470 0.77 -0.2
933,608 - CSW01_04470 0.78 -1.0
933,636 - CSW01_04470 0.78 -0.0
933,692 - CSW01_04470 0.80 -0.7
933,745 + CSW01_04470 0.81 -1.4
933,768 + CSW01_04470 0.82 -1.8
933,768 + CSW01_04470 0.82 +1.1
933,776 - CSW01_04470 0.82 +0.2
933,795 + CSW01_04470 0.82 +0.6
933,836 + CSW01_04470 0.83 +0.1
933,883 + CSW01_04470 0.85 -0.0
933,883 + CSW01_04470 0.85 -0.7
933,985 + CSW01_04470 0.87 -0.2
934,003 - CSW01_04470 0.88 +1.3
934,006 + CSW01_04470 0.88 +0.1
934,014 - CSW01_04470 0.88 -0.3
934,015 + CSW01_04470 0.88 -2.9
934,015 + CSW01_04470 0.88 +2.6
934,016 + CSW01_04470 0.88 +0.8
934,016 + CSW01_04470 0.88 +0.7
934,023 - CSW01_04470 0.88 +1.2
934,023 - CSW01_04470 0.88 +0.8
934,084 + CSW01_04470 0.90 -0.3
934,095 + -0.4
934,105 - -0.1
934,190 - +3.0
934,284 - +0.4
934,288 - -0.8
934,289 - -0.2
934,337 - -0.1
934,490 + -0.7
935,398 - +0.3

Or see this region's nucleotide sequence