Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04360

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04355 and CSW01_04360 are separated by 642 nucleotidesCSW01_04360 and CSW01_04365 are separated by 4 nucleotides CSW01_04355: CSW01_04355 - preprotein translocase, at 910,311 to 910,547 _04355 CSW01_04360: CSW01_04360 - IS5/IS1182 family transposase, at 911,190 to 911,590 _04360 CSW01_04365: CSW01_04365 - integrase, at 911,595 to 912,863 _04365 Position (kb) 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.212 kb on + strandat 910.220 kb on - strandat 910.260 kb on - strandat 910.270 kb on - strandat 910.270 kb on - strandat 910.270 kb on - strandat 910.282 kb on + strandat 910.282 kb on + strandat 910.301 kb on + strandat 910.301 kb on + strandat 910.309 kb on - strandat 910.309 kb on - strandat 910.352 kb on + strand, within CSW01_04355at 910.389 kb on + strand, within CSW01_04355at 910.397 kb on - strand, within CSW01_04355at 910.427 kb on + strand, within CSW01_04355at 910.472 kb on + strand, within CSW01_04355at 910.472 kb on + strand, within CSW01_04355at 910.472 kb on + strand, within CSW01_04355at 910.480 kb on - strand, within CSW01_04355at 910.530 kb on - strandat 910.560 kb on + strandat 910.574 kb on - strandat 910.617 kb on + strandat 910.625 kb on - strandat 910.633 kb on - strandat 910.667 kb on - strandat 910.668 kb on + strandat 910.673 kb on + strandat 910.686 kb on + strandat 910.686 kb on - strandat 910.729 kb on - strandat 910.769 kb on - strandat 910.803 kb on + strandat 910.811 kb on - strandat 910.817 kb on + strandat 910.828 kb on + strandat 910.844 kb on - strandat 910.890 kb on + strandat 910.890 kb on + strandat 910.918 kb on - strandat 911.057 kb on + strandat 911.123 kb on - strandat 911.161 kb on + strandat 911.161 kb on + strandat 911.169 kb on - strandat 911.169 kb on - strandat 911.216 kb on + strandat 911.218 kb on + strandat 911.226 kb on + strandat 911.226 kb on - strandat 911.233 kb on - strand, within CSW01_04360at 911.234 kb on - strand, within CSW01_04360at 911.234 kb on - strand, within CSW01_04360at 911.283 kb on + strand, within CSW01_04360at 911.342 kb on + strand, within CSW01_04360at 911.350 kb on - strand, within CSW01_04360at 911.555 kb on - strandat 911.601 kb on - strandat 911.601 kb on - strandat 911.603 kb on + strandat 911.642 kb on + strandat 911.667 kb on + strandat 911.714 kb on - strandat 911.750 kb on - strand, within CSW01_04365at 911.750 kb on - strand, within CSW01_04365at 911.833 kb on - strand, within CSW01_04365at 911.833 kb on - strand, within CSW01_04365at 911.842 kb on - strand, within CSW01_04365at 911.849 kb on + strand, within CSW01_04365at 911.849 kb on + strand, within CSW01_04365at 911.877 kb on + strand, within CSW01_04365at 911.884 kb on - strand, within CSW01_04365at 911.935 kb on + strand, within CSW01_04365at 911.940 kb on - strand, within CSW01_04365at 912.157 kb on + strand, within CSW01_04365at 912.207 kb on - strand, within CSW01_04365at 912.209 kb on + strand, within CSW01_04365at 912.209 kb on + strand, within CSW01_04365at 912.217 kb on - strand, within CSW01_04365at 912.290 kb on + strand, within CSW01_04365at 912.290 kb on + strand, within CSW01_04365at 912.323 kb on - strand, within CSW01_04365at 912.340 kb on + strand, within CSW01_04365at 912.382 kb on + strand, within CSW01_04365at 912.458 kb on - strand, within CSW01_04365at 912.482 kb on - strand, within CSW01_04365at 912.520 kb on + strand, within CSW01_04365at 912.539 kb on + strand, within CSW01_04365at 912.539 kb on + strand, within CSW01_04365at 912.547 kb on - strand, within CSW01_04365at 912.547 kb on - strand, within CSW01_04365

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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910,212 + +0.2
910,220 - +0.3
910,260 - +0.2
910,270 - -0.3
910,270 - -0.1
910,270 - +0.6
910,282 + +0.4
910,282 + -0.5
910,301 + +0.1
910,301 + -1.0
910,309 - -0.3
910,309 - +0.1
910,352 + CSW01_04355 0.17 -0.5
910,389 + CSW01_04355 0.33 -0.4
910,397 - CSW01_04355 0.36 +0.2
910,427 + CSW01_04355 0.49 +0.0
910,472 + CSW01_04355 0.68 -0.3
910,472 + CSW01_04355 0.68 +0.5
910,472 + CSW01_04355 0.68 +0.1
910,480 - CSW01_04355 0.71 -0.2
910,530 - -0.2
910,560 + -0.6
910,574 - -0.3
910,617 + +0.4
910,625 - +0.4
910,633 - -0.9
910,667 - -0.1
910,668 + -0.5
910,673 + -0.2
910,686 + -0.6
910,686 - -0.0
910,729 - +0.7
910,769 - +0.1
910,803 + +0.1
910,811 - +0.5
910,817 + -1.4
910,828 + +0.4
910,844 - +0.0
910,890 + -0.0
910,890 + -0.5
910,918 - +0.2
911,057 + +0.3
911,123 - -0.8
911,161 + +1.3
911,161 + +0.5
911,169 - +1.1
911,169 - -0.7
911,216 + +0.6
911,218 + +0.8
911,226 + -0.1
911,226 - -0.9
911,233 - CSW01_04360 0.11 -0.1
911,234 - CSW01_04360 0.11 +0.4
911,234 - CSW01_04360 0.11 +1.0
911,283 + CSW01_04360 0.23 +0.1
911,342 + CSW01_04360 0.38 +1.0
911,350 - CSW01_04360 0.40 +0.7
911,555 - +0.8
911,601 - -0.7
911,601 - +0.9
911,603 + +0.6
911,642 + -0.1
911,667 + +0.4
911,714 - -3.0
911,750 - CSW01_04365 0.12 +0.1
911,750 - CSW01_04365 0.12 -0.0
911,833 - CSW01_04365 0.19 +0.5
911,833 - CSW01_04365 0.19 -1.0
911,842 - CSW01_04365 0.19 +0.3
911,849 + CSW01_04365 0.20 -0.2
911,849 + CSW01_04365 0.20 +0.2
911,877 + CSW01_04365 0.22 -0.5
911,884 - CSW01_04365 0.23 -0.7
911,935 + CSW01_04365 0.27 +0.7
911,940 - CSW01_04365 0.27 +0.0
912,157 + CSW01_04365 0.44 -2.0
912,207 - CSW01_04365 0.48 +0.9
912,209 + CSW01_04365 0.48 -0.9
912,209 + CSW01_04365 0.48 -0.4
912,217 - CSW01_04365 0.49 -0.9
912,290 + CSW01_04365 0.55 -0.1
912,290 + CSW01_04365 0.55 -0.4
912,323 - CSW01_04365 0.57 +0.7
912,340 + CSW01_04365 0.59 -0.0
912,382 + CSW01_04365 0.62 -0.3
912,458 - CSW01_04365 0.68 -1.0
912,482 - CSW01_04365 0.70 -0.4
912,520 + CSW01_04365 0.73 -0.1
912,539 + CSW01_04365 0.74 -1.4
912,539 + CSW01_04365 0.74 +1.2
912,547 - CSW01_04365 0.75 +0.3
912,547 - CSW01_04365 0.75 -2.0

Or see this region's nucleotide sequence