Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04025

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04020 and CSW01_04025 are separated by 177 nucleotidesCSW01_04025 and CSW01_04030 overlap by 4 nucleotides CSW01_04020: CSW01_04020 - vibriobactin biosynthesis amide synthase VibH, at 829,723 to 831,039 _04020 CSW01_04025: CSW01_04025 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 831,217 to 832,194 _04025 CSW01_04030: CSW01_04030 - iron ABC transporter permease, at 832,191 to 833,243 _04030 Position (kb) 831 832 833Strain fitness (log2 ratio) -2 -1 0 1 2 3at 830.231 kb on - strand, within CSW01_04020at 830.265 kb on - strand, within CSW01_04020at 830.290 kb on - strand, within CSW01_04020at 830.304 kb on - strand, within CSW01_04020at 830.383 kb on + strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.443 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.488 kb on + strand, within CSW01_04020at 830.496 kb on - strand, within CSW01_04020at 830.555 kb on + strand, within CSW01_04020at 830.556 kb on - strand, within CSW01_04020at 830.636 kb on - strand, within CSW01_04020at 830.657 kb on - strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.679 kb on + strand, within CSW01_04020at 830.758 kb on - strand, within CSW01_04020at 830.808 kb on + strand, within CSW01_04020at 830.808 kb on + strand, within CSW01_04020at 830.811 kb on + strand, within CSW01_04020at 830.816 kb on - strand, within CSW01_04020at 830.862 kb on - strand, within CSW01_04020at 830.878 kb on + strand, within CSW01_04020at 830.886 kb on - strand, within CSW01_04020at 830.900 kb on + strand, within CSW01_04020at 830.900 kb on + strand, within CSW01_04020at 830.908 kb on - strandat 830.908 kb on - strandat 830.969 kb on - strandat 830.969 kb on - strandat 831.041 kb on + strandat 831.056 kb on - strandat 831.056 kb on - strandat 831.056 kb on - strandat 831.093 kb on + strandat 831.101 kb on - strandat 831.130 kb on + strandat 831.130 kb on + strandat 831.136 kb on - strandat 831.136 kb on - strandat 831.138 kb on - strandat 831.163 kb on + strandat 831.279 kb on + strandat 831.315 kb on + strand, within CSW01_04025at 831.349 kb on - strand, within CSW01_04025at 831.399 kb on + strand, within CSW01_04025at 831.401 kb on + strand, within CSW01_04025at 831.407 kb on - strand, within CSW01_04025at 831.438 kb on - strand, within CSW01_04025at 831.544 kb on + strand, within CSW01_04025at 831.592 kb on + strand, within CSW01_04025at 831.687 kb on + strand, within CSW01_04025at 831.693 kb on - strand, within CSW01_04025at 831.737 kb on + strand, within CSW01_04025at 831.745 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.815 kb on + strand, within CSW01_04025at 831.823 kb on - strand, within CSW01_04025at 831.851 kb on + strand, within CSW01_04025at 831.876 kb on + strand, within CSW01_04025at 831.886 kb on + strand, within CSW01_04025at 831.948 kb on + strand, within CSW01_04025at 832.058 kb on + strand, within CSW01_04025at 832.106 kb on + strandat 832.111 kb on + strandat 832.113 kb on + strandat 832.114 kb on - strandat 832.215 kb on - strandat 832.436 kb on - strand, within CSW01_04030at 832.454 kb on + strand, within CSW01_04030at 832.498 kb on - strand, within CSW01_04030at 832.537 kb on - strand, within CSW01_04030at 832.559 kb on - strand, within CSW01_04030at 832.566 kb on + strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.605 kb on + strand, within CSW01_04030at 832.628 kb on - strand, within CSW01_04030at 832.661 kb on - strand, within CSW01_04030at 832.667 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.818 kb on - strand, within CSW01_04030at 832.886 kb on + strand, within CSW01_04030at 832.911 kb on - strand, within CSW01_04030at 832.928 kb on - strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.974 kb on + strand, within CSW01_04030at 832.993 kb on - strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.067 kb on - strand, within CSW01_04030at 833.081 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.096 kb on + strand, within CSW01_04030at 833.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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830,231 - CSW01_04020 0.39 +0.6
830,265 - CSW01_04020 0.41 -0.0
830,290 - CSW01_04020 0.43 +3.0
830,304 - CSW01_04020 0.44 +0.8
830,383 + CSW01_04020 0.50 -0.1
830,401 - CSW01_04020 0.51 -2.2
830,401 - CSW01_04020 0.51 -0.8
830,401 - CSW01_04020 0.51 -0.4
830,443 + CSW01_04020 0.55 +0.6
830,448 + CSW01_04020 0.55 -1.1
830,448 + CSW01_04020 0.55 -0.7
830,451 - CSW01_04020 0.55 -0.4
830,451 - CSW01_04020 0.55 +0.7
830,488 + CSW01_04020 0.58 +0.4
830,496 - CSW01_04020 0.59 +0.1
830,555 + CSW01_04020 0.63 +0.2
830,556 - CSW01_04020 0.63 -0.9
830,636 - CSW01_04020 0.69 +0.8
830,657 - CSW01_04020 0.71 +0.3
830,668 + CSW01_04020 0.72 -0.3
830,668 + CSW01_04020 0.72 +0.1
830,679 + CSW01_04020 0.73 -0.4
830,758 - CSW01_04020 0.79 -1.2
830,808 + CSW01_04020 0.82 +0.2
830,808 + CSW01_04020 0.82 +0.3
830,811 + CSW01_04020 0.83 +0.3
830,816 - CSW01_04020 0.83 +0.3
830,862 - CSW01_04020 0.86 -0.5
830,878 + CSW01_04020 0.88 -0.4
830,886 - CSW01_04020 0.88 -0.4
830,900 + CSW01_04020 0.89 +0.3
830,900 + CSW01_04020 0.89 -0.4
830,908 - -0.7
830,908 - +0.5
830,969 - -0.4
830,969 - -0.8
831,041 + -0.2
831,056 - +0.4
831,056 - +1.1
831,056 - -0.2
831,093 + -0.3
831,101 - -0.4
831,130 + -0.7
831,130 + +0.2
831,136 - -1.1
831,136 - -0.4
831,138 - -0.0
831,163 + +0.3
831,279 + -0.4
831,315 + CSW01_04025 0.10 -0.7
831,349 - CSW01_04025 0.13 +0.1
831,399 + CSW01_04025 0.19 +0.6
831,401 + CSW01_04025 0.19 -0.5
831,407 - CSW01_04025 0.19 +0.2
831,438 - CSW01_04025 0.23 +1.2
831,544 + CSW01_04025 0.33 +0.1
831,592 + CSW01_04025 0.38 +0.2
831,687 + CSW01_04025 0.48 +1.2
831,693 - CSW01_04025 0.49 +2.8
831,737 + CSW01_04025 0.53 +0.4
831,745 - CSW01_04025 0.54 +0.9
831,757 - CSW01_04025 0.55 +0.7
831,757 - CSW01_04025 0.55 +1.5
831,815 + CSW01_04025 0.61 +1.4
831,823 - CSW01_04025 0.62 +0.7
831,851 + CSW01_04025 0.65 +0.5
831,876 + CSW01_04025 0.67 +0.6
831,886 + CSW01_04025 0.68 +0.1
831,948 + CSW01_04025 0.75 +0.1
832,058 + CSW01_04025 0.86 -1.0
832,106 + -0.8
832,111 + -0.3
832,113 + -0.7
832,114 - +0.6
832,215 - -0.9
832,436 - CSW01_04030 0.23 +2.6
832,454 + CSW01_04030 0.25 -0.5
832,498 - CSW01_04030 0.29 +0.1
832,537 - CSW01_04030 0.33 -0.7
832,559 - CSW01_04030 0.35 +0.8
832,566 + CSW01_04030 0.36 -0.2
832,602 - CSW01_04030 0.39 -0.7
832,602 - CSW01_04030 0.39 +0.2
832,605 + CSW01_04030 0.39 +0.6
832,628 - CSW01_04030 0.42 -0.5
832,661 - CSW01_04030 0.45 -1.2
832,667 + CSW01_04030 0.45 -0.5
832,686 + CSW01_04030 0.47 +1.6
832,686 + CSW01_04030 0.47 -0.1
832,694 - CSW01_04030 0.48 -0.4
832,694 - CSW01_04030 0.48 +0.1
832,818 - CSW01_04030 0.60 +0.3
832,886 + CSW01_04030 0.66 -0.8
832,911 - CSW01_04030 0.68 -0.4
832,928 - CSW01_04030 0.70 -0.6
832,943 + CSW01_04030 0.71 +0.6
832,943 + CSW01_04030 0.71 +1.3
832,951 - CSW01_04030 0.72 +0.6
832,951 - CSW01_04030 0.72 +1.0
832,974 + CSW01_04030 0.74 -0.2
832,993 - CSW01_04030 0.76 +0.5
833,059 + CSW01_04030 0.82 -0.7
833,059 + CSW01_04030 0.82 +0.8
833,059 + CSW01_04030 0.82 +0.0
833,067 - CSW01_04030 0.83 +0.0
833,081 + CSW01_04030 0.85 +1.8
833,086 + CSW01_04030 0.85 +2.1
833,086 + CSW01_04030 0.85 -0.3
833,089 - CSW01_04030 0.85 -0.6
833,089 - CSW01_04030 0.85 +0.2
833,096 + CSW01_04030 0.86 +1.8
833,172 - -0.1

Or see this region's nucleotide sequence