Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02410

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02400 and CSW01_02405 are separated by 101 nucleotidesCSW01_02405 and CSW01_02410 are separated by 13 nucleotidesCSW01_02410 and CSW01_02415 are separated by 239 nucleotides CSW01_02400: CSW01_02400 - lytic murein transglycosylase, at 480,423 to 481,550 _02400 CSW01_02405: CSW01_02405 - Fe(2+)-trafficking protein, at 481,652 to 481,924 _02405 CSW01_02410: CSW01_02410 - adenine DNA glycosylase, at 481,938 to 482,999 _02410 CSW01_02415: CSW01_02415 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 483,239 to 483,958 _02415 Position (kb) 481 482 483Strain fitness (log2 ratio) -2 -1 0 1 2at 480.990 kb on - strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.049 kb on + strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.093 kb on + strand, within CSW01_02400at 481.121 kb on - strand, within CSW01_02400at 481.144 kb on - strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.177 kb on - strand, within CSW01_02400at 481.251 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400at 481.402 kb on - strand, within CSW01_02400at 481.402 kb on - strand, within CSW01_02400at 481.440 kb on - strandat 481.440 kb on - strandat 481.520 kb on - strandat 481.520 kb on - strandat 481.520 kb on - strandat 481.538 kb on - strandat 481.605 kb on - strandat 481.666 kb on + strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.675 kb on - strandat 481.814 kb on - strand, within CSW01_02405at 481.936 kb on - strandat 481.969 kb on + strandat 481.977 kb on - strandat 481.977 kb on - strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.028 kb on + strandat 482.038 kb on + strandat 482.046 kb on - strand, within CSW01_02410at 482.046 kb on - strand, within CSW01_02410at 482.114 kb on + strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.126 kb on + strand, within CSW01_02410at 482.183 kb on + strand, within CSW01_02410at 482.191 kb on - strand, within CSW01_02410at 482.191 kb on - strand, within CSW01_02410at 482.201 kb on - strand, within CSW01_02410at 482.201 kb on - strand, within CSW01_02410at 482.229 kb on + strand, within CSW01_02410at 482.237 kb on - strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.329 kb on - strand, within CSW01_02410at 482.352 kb on + strand, within CSW01_02410at 482.360 kb on - strand, within CSW01_02410at 482.395 kb on + strand, within CSW01_02410at 482.451 kb on - strand, within CSW01_02410at 482.474 kb on - strand, within CSW01_02410at 482.547 kb on + strand, within CSW01_02410at 482.567 kb on + strand, within CSW01_02410at 482.575 kb on - strand, within CSW01_02410at 482.580 kb on - strand, within CSW01_02410at 482.586 kb on - strand, within CSW01_02410at 482.623 kb on + strand, within CSW01_02410at 482.623 kb on + strand, within CSW01_02410at 482.628 kb on + strand, within CSW01_02410at 482.633 kb on + strand, within CSW01_02410at 482.656 kb on + strand, within CSW01_02410at 482.664 kb on - strand, within CSW01_02410at 482.676 kb on - strand, within CSW01_02410at 482.679 kb on + strand, within CSW01_02410at 482.686 kb on - strand, within CSW01_02410at 482.720 kb on - strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.734 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.763 kb on + strand, within CSW01_02410at 482.814 kb on + strand, within CSW01_02410at 482.824 kb on + strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.854 kb on - strand, within CSW01_02410at 482.974 kb on + strandat 482.982 kb on - strandat 482.992 kb on - strandat 482.992 kb on - strandat 482.992 kb on - strandat 483.057 kb on - strandat 483.109 kb on - strandat 483.109 kb on - strandat 483.131 kb on + strandat 483.131 kb on + strandat 483.145 kb on - strandat 483.166 kb on + strandat 483.173 kb on + strandat 483.181 kb on - strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.267 kb on - strandat 483.281 kb on + strandat 483.281 kb on + strandat 483.325 kb on + strand, within CSW01_02415at 483.367 kb on + strand, within CSW01_02415at 483.510 kb on + strand, within CSW01_02415at 483.515 kb on + strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.526 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.699 kb on + strand, within CSW01_02415at 483.755 kb on + strand, within CSW01_02415at 483.758 kb on + strand, within CSW01_02415at 483.763 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.891 kb on + strandat 483.899 kb on - strandat 483.926 kb on + strandat 483.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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480,990 - CSW01_02400 0.50 -1.8
481,042 + CSW01_02400 0.55 +0.5
481,042 + CSW01_02400 0.55 +0.0
481,042 + CSW01_02400 0.55 +0.3
481,042 + CSW01_02400 0.55 -0.2
481,042 + CSW01_02400 0.55 +0.2
481,042 + CSW01_02400 0.55 +0.4
481,042 + CSW01_02400 0.55 -0.3
481,049 + CSW01_02400 0.55 +0.6
481,050 - CSW01_02400 0.56 -1.0
481,050 - CSW01_02400 0.56 +0.4
481,093 + CSW01_02400 0.59 +1.2
481,121 - CSW01_02400 0.62 +0.6
481,144 - CSW01_02400 0.64 +0.7
481,169 + CSW01_02400 0.66 +1.1
481,169 + CSW01_02400 0.66 +0.9
481,177 - CSW01_02400 0.67 +0.3
481,251 - CSW01_02400 0.73 -0.8
481,279 - CSW01_02400 0.76 +0.2
481,279 - CSW01_02400 0.76 +0.8
481,402 - CSW01_02400 0.87 -0.3
481,402 - CSW01_02400 0.87 +1.3
481,440 - -0.0
481,440 - -0.5
481,520 - +0.4
481,520 - +0.4
481,520 - +0.6
481,538 - +1.4
481,605 - +1.8
481,666 + +0.1
481,674 - +0.6
481,674 - +0.0
481,674 - -0.1
481,674 - +1.0
481,674 - +0.5
481,674 - +0.8
481,675 - -0.2
481,814 - CSW01_02405 0.59 +0.2
481,936 - +0.2
481,969 + -1.3
481,977 - -0.7
481,977 - +0.3
482,018 + -0.0
482,018 + -1.5
482,018 + -0.5
482,018 + +0.1
482,018 + +1.0
482,018 + +0.5
482,026 - -0.1
482,026 - -0.3
482,026 - +0.4
482,026 - -0.2
482,028 + +0.0
482,038 + -1.3
482,046 - CSW01_02410 0.10 -0.3
482,046 - CSW01_02410 0.10 +0.5
482,114 + CSW01_02410 0.17 +0.9
482,122 - CSW01_02410 0.17 -1.7
482,122 - CSW01_02410 0.17 -0.5
482,122 - CSW01_02410 0.17 +0.3
482,122 - CSW01_02410 0.17 -0.5
482,122 - CSW01_02410 0.17 +0.1
482,122 - CSW01_02410 0.17 +0.5
482,122 - CSW01_02410 0.17 -0.3
482,122 - CSW01_02410 0.17 -0.2
482,126 + CSW01_02410 0.18 -0.9
482,183 + CSW01_02410 0.23 +0.4
482,191 - CSW01_02410 0.24 -0.6
482,191 - CSW01_02410 0.24 +1.7
482,201 - CSW01_02410 0.25 -0.5
482,201 - CSW01_02410 0.25 -1.0
482,229 + CSW01_02410 0.27 +0.4
482,237 - CSW01_02410 0.28 -0.8
482,264 + CSW01_02410 0.31 -1.2
482,264 + CSW01_02410 0.31 +0.0
482,264 + CSW01_02410 0.31 +0.2
482,264 + CSW01_02410 0.31 -0.7
482,264 + CSW01_02410 0.31 +0.3
482,264 + CSW01_02410 0.31 -0.0
482,264 + CSW01_02410 0.31 +0.3
482,272 - CSW01_02410 0.31 +0.8
482,272 - CSW01_02410 0.31 +0.1
482,272 - CSW01_02410 0.31 -0.4
482,272 - CSW01_02410 0.31 +0.4
482,329 - CSW01_02410 0.37 -0.2
482,352 + CSW01_02410 0.39 -0.2
482,360 - CSW01_02410 0.40 +1.9
482,395 + CSW01_02410 0.43 +0.1
482,451 - CSW01_02410 0.48 +0.4
482,474 - CSW01_02410 0.50 +2.2
482,547 + CSW01_02410 0.57 -0.3
482,567 + CSW01_02410 0.59 +1.4
482,575 - CSW01_02410 0.60 -0.4
482,580 - CSW01_02410 0.60 +0.6
482,586 - CSW01_02410 0.61 -0.2
482,623 + CSW01_02410 0.65 +0.4
482,623 + CSW01_02410 0.65 +0.5
482,628 + CSW01_02410 0.65 -0.0
482,633 + CSW01_02410 0.65 +0.3
482,656 + CSW01_02410 0.68 -0.0
482,664 - CSW01_02410 0.68 +0.6
482,676 - CSW01_02410 0.69 +0.0
482,679 + CSW01_02410 0.70 +0.4
482,686 - CSW01_02410 0.70 +0.3
482,720 - CSW01_02410 0.74 +0.3
482,731 + CSW01_02410 0.75 -1.2
482,731 + CSW01_02410 0.75 -0.4
482,731 + CSW01_02410 0.75 -1.1
482,731 + CSW01_02410 0.75 +0.4
482,731 + CSW01_02410 0.75 -0.6
482,734 - CSW01_02410 0.75 +0.8
482,739 - CSW01_02410 0.75 +0.4
482,739 - CSW01_02410 0.75 -0.1
482,739 - CSW01_02410 0.75 +1.1
482,739 - CSW01_02410 0.75 -0.4
482,739 - CSW01_02410 0.75 +0.1
482,739 - CSW01_02410 0.75 -0.4
482,739 - CSW01_02410 0.75 -0.0
482,763 + CSW01_02410 0.78 +0.7
482,814 + CSW01_02410 0.82 -1.4
482,824 + CSW01_02410 0.83 +0.5
482,832 - CSW01_02410 0.84 -0.1
482,832 - CSW01_02410 0.84 +1.9
482,832 - CSW01_02410 0.84 -0.8
482,854 - CSW01_02410 0.86 +0.3
482,974 + +0.6
482,982 - +0.7
482,992 - -0.2
482,992 - +1.5
482,992 - -0.9
483,057 - -0.1
483,109 - -0.8
483,109 - -0.2
483,131 + -0.3
483,131 + -0.1
483,145 - -0.8
483,166 + +0.2
483,173 + +0.3
483,181 - +0.0
483,255 + +2.4
483,255 + -0.4
483,255 + -0.8
483,255 + +0.0
483,267 - -0.1
483,281 + -0.3
483,281 + -0.5
483,325 + CSW01_02415 0.12 -2.7
483,367 + CSW01_02415 0.18 -0.2
483,510 + CSW01_02415 0.38 -0.6
483,515 + CSW01_02415 0.38 -0.7
483,518 - CSW01_02415 0.39 +0.9
483,518 - CSW01_02415 0.39 +0.5
483,525 + CSW01_02415 0.40 +0.5
483,525 + CSW01_02415 0.40 +0.9
483,525 + CSW01_02415 0.40 -0.4
483,525 + CSW01_02415 0.40 -0.4
483,525 + CSW01_02415 0.40 -0.5
483,525 + CSW01_02415 0.40 -0.2
483,525 + CSW01_02415 0.40 -0.2
483,525 + CSW01_02415 0.40 -0.4
483,525 + CSW01_02415 0.40 +0.2
483,526 - CSW01_02415 0.40 +0.4
483,533 - CSW01_02415 0.41 +0.0
483,533 - CSW01_02415 0.41 +0.5
483,533 - CSW01_02415 0.41 -0.5
483,533 - CSW01_02415 0.41 -0.1
483,533 - CSW01_02415 0.41 +1.6
483,699 + CSW01_02415 0.64 -0.6
483,755 + CSW01_02415 0.72 -0.1
483,758 + CSW01_02415 0.72 -0.5
483,763 - CSW01_02415 0.73 +0.6
483,764 - CSW01_02415 0.73 -0.2
483,764 - CSW01_02415 0.73 -0.5
483,886 + CSW01_02415 0.90 +0.6
483,886 + CSW01_02415 0.90 -0.0
483,891 + +0.1
483,899 - -0.1
483,926 + +2.0
483,934 - +0.1

Or see this region's nucleotide sequence