Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01450

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01445 and CSW01_01450 are separated by 117 nucleotidesCSW01_01450 and CSW01_01455 are separated by 234 nucleotidesCSW01_01455 and CSW01_01460 are separated by 20 nucleotides CSW01_01445: CSW01_01445 - lysine decarboxylase, at 285,839 to 287,974 _01445 CSW01_01450: CSW01_01450 - methyl-accepting chemotaxis protein, at 288,092 to 289,762 _01450 CSW01_01455: CSW01_01455 - peptidase, at 289,997 to 290,674 _01455 CSW01_01460: CSW01_01460 - TonB-dependent siderophore receptor, at 290,695 to 292,737 _01460 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2at 287.100 kb on + strand, within CSW01_01445at 287.100 kb on + strand, within CSW01_01445at 287.160 kb on - strand, within CSW01_01445at 287.212 kb on + strand, within CSW01_01445at 287.220 kb on - strand, within CSW01_01445at 287.220 kb on - strand, within CSW01_01445at 287.220 kb on - strand, within CSW01_01445at 287.287 kb on + strand, within CSW01_01445at 287.287 kb on + strand, within CSW01_01445at 287.287 kb on + strand, within CSW01_01445at 287.295 kb on - strand, within CSW01_01445at 287.300 kb on - strand, within CSW01_01445at 287.301 kb on - strand, within CSW01_01445at 287.310 kb on - strand, within CSW01_01445at 287.330 kb on - strand, within CSW01_01445at 287.351 kb on + strand, within CSW01_01445at 287.364 kb on - strand, within CSW01_01445at 287.364 kb on - strand, within CSW01_01445at 287.446 kb on + strand, within CSW01_01445at 287.457 kb on + strand, within CSW01_01445at 287.467 kb on + strand, within CSW01_01445at 287.475 kb on - strand, within CSW01_01445at 287.493 kb on + strand, within CSW01_01445at 287.493 kb on + strand, within CSW01_01445at 287.501 kb on - strand, within CSW01_01445at 287.501 kb on - strand, within CSW01_01445at 287.501 kb on - strand, within CSW01_01445at 287.501 kb on - strand, within CSW01_01445at 287.501 kb on - strand, within CSW01_01445at 287.503 kb on + strand, within CSW01_01445at 287.511 kb on - strand, within CSW01_01445at 287.511 kb on - strand, within CSW01_01445at 287.528 kb on - strand, within CSW01_01445at 287.528 kb on - strand, within CSW01_01445at 287.552 kb on + strand, within CSW01_01445at 287.556 kb on - strand, within CSW01_01445at 287.565 kb on - strand, within CSW01_01445at 287.585 kb on + strand, within CSW01_01445at 287.594 kb on + strand, within CSW01_01445at 287.602 kb on - strand, within CSW01_01445at 287.653 kb on + strand, within CSW01_01445at 287.788 kb on + strandat 287.796 kb on - strandat 287.796 kb on - strandat 287.796 kb on - strandat 287.804 kb on - strandat 287.852 kb on + strandat 287.852 kb on + strandat 287.852 kb on + strandat 287.852 kb on + strandat 287.860 kb on - strandat 287.952 kb on - strandat 287.952 kb on - strandat 287.976 kb on - strandat 287.979 kb on + strandat 287.979 kb on + strandat 287.979 kb on + strandat 287.987 kb on - strandat 287.987 kb on - strandat 287.987 kb on - strandat 287.987 kb on - strandat 287.987 kb on - strandat 287.988 kb on + strandat 287.988 kb on + strandat 287.988 kb on + strandat 287.996 kb on - strandat 288.020 kb on + strandat 288.026 kb on - strandat 288.028 kb on - strandat 288.106 kb on + strandat 288.106 kb on + strandat 288.106 kb on + strandat 288.106 kb on + strandat 288.114 kb on - strandat 288.114 kb on - strandat 288.114 kb on - strandat 288.114 kb on - strandat 288.114 kb on - strandat 288.114 kb on - strandat 288.122 kb on - strandat 288.156 kb on - strandat 288.185 kb on + strandat 288.193 kb on - strandat 288.211 kb on + strandat 288.211 kb on + strandat 288.217 kb on + strandat 288.217 kb on + strandat 288.217 kb on + strandat 288.285 kb on - strand, within CSW01_01450at 288.302 kb on - strand, within CSW01_01450at 288.331 kb on - strand, within CSW01_01450at 288.350 kb on - strand, within CSW01_01450at 288.373 kb on + strand, within CSW01_01450at 288.381 kb on - strand, within CSW01_01450at 288.399 kb on - strand, within CSW01_01450at 288.399 kb on - strand, within CSW01_01450at 288.481 kb on - strand, within CSW01_01450at 288.496 kb on + strand, within CSW01_01450at 288.496 kb on + strand, within CSW01_01450at 288.509 kb on + strand, within CSW01_01450at 288.539 kb on - strand, within CSW01_01450at 288.571 kb on - strand, within CSW01_01450at 288.589 kb on + strand, within CSW01_01450at 288.605 kb on + strand, within CSW01_01450at 288.623 kb on + strand, within CSW01_01450at 288.623 kb on + strand, within CSW01_01450at 288.666 kb on + strand, within CSW01_01450at 288.765 kb on - strand, within CSW01_01450at 288.836 kb on - strand, within CSW01_01450at 288.838 kb on + strand, within CSW01_01450at 288.841 kb on - strand, within CSW01_01450at 288.870 kb on + strand, within CSW01_01450at 288.870 kb on + strand, within CSW01_01450at 288.878 kb on - strand, within CSW01_01450at 288.878 kb on - strand, within CSW01_01450at 288.878 kb on - strand, within CSW01_01450at 288.878 kb on - strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.958 kb on + strand, within CSW01_01450at 288.966 kb on - strand, within CSW01_01450at 288.966 kb on - strand, within CSW01_01450at 289.033 kb on - strand, within CSW01_01450at 289.075 kb on + strand, within CSW01_01450at 289.083 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.147 kb on + strand, within CSW01_01450at 289.147 kb on + strand, within CSW01_01450at 289.155 kb on - strand, within CSW01_01450at 289.155 kb on - strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.283 kb on - strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.302 kb on - strand, within CSW01_01450at 289.340 kb on + strand, within CSW01_01450at 289.348 kb on - strand, within CSW01_01450at 289.348 kb on - strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.381 kb on - strand, within CSW01_01450at 289.381 kb on - strand, within CSW01_01450at 289.403 kb on + strand, within CSW01_01450at 289.469 kb on + strand, within CSW01_01450at 289.504 kb on - strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.537 kb on + strand, within CSW01_01450at 289.537 kb on + strand, within CSW01_01450at 289.542 kb on + strand, within CSW01_01450at 289.542 kb on + strand, within CSW01_01450at 289.547 kb on + strand, within CSW01_01450at 289.550 kb on - strand, within CSW01_01450at 289.569 kb on - strand, within CSW01_01450at 289.625 kb on + strandat 289.717 kb on + strandat 289.717 kb on + strandat 289.717 kb on + strandat 289.725 kb on - strandat 289.728 kb on + strandat 289.743 kb on + strandat 289.751 kb on - strandat 289.780 kb on + strandat 289.835 kb on + strandat 289.843 kb on + strandat 289.843 kb on + strandat 289.879 kb on + strandat 289.925 kb on + strandat 289.934 kb on + strandat 289.949 kb on - strandat 290.017 kb on + strandat 290.077 kb on - strand, within CSW01_01455at 290.077 kb on - strand, within CSW01_01455at 290.089 kb on + strand, within CSW01_01455at 290.094 kb on + strand, within CSW01_01455at 290.104 kb on + strand, within CSW01_01455at 290.153 kb on + strand, within CSW01_01455at 290.160 kb on + strand, within CSW01_01455at 290.161 kb on - strand, within CSW01_01455at 290.184 kb on + strand, within CSW01_01455at 290.186 kb on + strand, within CSW01_01455at 290.231 kb on - strand, within CSW01_01455at 290.272 kb on - strand, within CSW01_01455at 290.275 kb on + strand, within CSW01_01455at 290.287 kb on - strand, within CSW01_01455at 290.320 kb on + strand, within CSW01_01455at 290.320 kb on + strand, within CSW01_01455at 290.328 kb on - strand, within CSW01_01455at 290.380 kb on + strand, within CSW01_01455at 290.385 kb on + strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.398 kb on - strand, within CSW01_01455at 290.414 kb on - strand, within CSW01_01455at 290.428 kb on - strand, within CSW01_01455at 290.517 kb on + strand, within CSW01_01455at 290.525 kb on - strand, within CSW01_01455at 290.525 kb on - strand, within CSW01_01455at 290.539 kb on + strand, within CSW01_01455at 290.585 kb on - strand, within CSW01_01455at 290.585 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.607 kb on - strandat 290.632 kb on + strandat 290.637 kb on + strandat 290.642 kb on + strandat 290.648 kb on + strandat 290.654 kb on + strandat 290.654 kb on - strandat 290.701 kb on - strandat 290.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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287,100 + CSW01_01445 0.59 -1.2
287,100 + CSW01_01445 0.59 -0.4
287,160 - CSW01_01445 0.62 -0.2
287,212 + CSW01_01445 0.64 -0.3
287,220 - CSW01_01445 0.65 -1.6
287,220 - CSW01_01445 0.65 -0.7
287,220 - CSW01_01445 0.65 +1.7
287,287 + CSW01_01445 0.68 -0.5
287,287 + CSW01_01445 0.68 +1.3
287,287 + CSW01_01445 0.68 +0.4
287,295 - CSW01_01445 0.68 -0.3
287,300 - CSW01_01445 0.68 +0.9
287,301 - CSW01_01445 0.68 -0.9
287,310 - CSW01_01445 0.69 -0.3
287,330 - CSW01_01445 0.70 +0.9
287,351 + CSW01_01445 0.71 -0.5
287,364 - CSW01_01445 0.71 +0.2
287,364 - CSW01_01445 0.71 +0.7
287,446 + CSW01_01445 0.75 -0.9
287,457 + CSW01_01445 0.76 -0.5
287,467 + CSW01_01445 0.76 +0.1
287,475 - CSW01_01445 0.77 -0.0
287,493 + CSW01_01445 0.77 +0.0
287,493 + CSW01_01445 0.77 -0.7
287,501 - CSW01_01445 0.78 +0.3
287,501 - CSW01_01445 0.78 -0.9
287,501 - CSW01_01445 0.78 -0.6
287,501 - CSW01_01445 0.78 +1.1
287,501 - CSW01_01445 0.78 -0.8
287,503 + CSW01_01445 0.78 +0.2
287,511 - CSW01_01445 0.78 -0.1
287,511 - CSW01_01445 0.78 -0.1
287,528 - CSW01_01445 0.79 -0.5
287,528 - CSW01_01445 0.79 +0.5
287,552 + CSW01_01445 0.80 -1.0
287,556 - CSW01_01445 0.80 -0.7
287,565 - CSW01_01445 0.81 -0.2
287,585 + CSW01_01445 0.82 -1.4
287,594 + CSW01_01445 0.82 -0.6
287,602 - CSW01_01445 0.83 +0.0
287,653 + CSW01_01445 0.85 -0.3
287,788 + -0.4
287,796 - -0.3
287,796 - +0.0
287,796 - +0.8
287,804 - -2.5
287,852 + -1.0
287,852 + -0.2
287,852 + -0.3
287,852 + +0.1
287,860 - -1.1
287,952 - -1.9
287,952 - -0.3
287,976 - -0.2
287,979 + +0.9
287,979 + +1.5
287,979 + +0.7
287,987 - +0.9
287,987 - -0.2
287,987 - -0.2
287,987 - -0.5
287,987 - +0.8
287,988 + -0.6
287,988 + -0.5
287,988 + -0.2
287,996 - +0.4
288,020 + -1.5
288,026 - +1.3
288,028 - -0.6
288,106 + -0.3
288,106 + +0.7
288,106 + -0.5
288,106 + -0.1
288,114 - +0.4
288,114 - -0.1
288,114 - +0.1
288,114 - +0.0
288,114 - +0.2
288,114 - -0.0
288,122 - -0.6
288,156 - +0.2
288,185 + +1.2
288,193 - +0.6
288,211 + -0.1
288,211 + -0.3
288,217 + -0.0
288,217 + -1.0
288,217 + -0.1
288,285 - CSW01_01450 0.12 -0.3
288,302 - CSW01_01450 0.13 +0.6
288,331 - CSW01_01450 0.14 -0.6
288,350 - CSW01_01450 0.15 -0.1
288,373 + CSW01_01450 0.17 -0.7
288,381 - CSW01_01450 0.17 -1.2
288,399 - CSW01_01450 0.18 -0.3
288,399 - CSW01_01450 0.18 -0.5
288,481 - CSW01_01450 0.23 -0.2
288,496 + CSW01_01450 0.24 -1.4
288,496 + CSW01_01450 0.24 -0.6
288,509 + CSW01_01450 0.25 -0.4
288,539 - CSW01_01450 0.27 -0.2
288,571 - CSW01_01450 0.29 -0.1
288,589 + CSW01_01450 0.30 +0.2
288,605 + CSW01_01450 0.31 +0.8
288,623 + CSW01_01450 0.32 +0.4
288,623 + CSW01_01450 0.32 +1.3
288,666 + CSW01_01450 0.34 +0.7
288,765 - CSW01_01450 0.40 +0.0
288,836 - CSW01_01450 0.45 +1.3
288,838 + CSW01_01450 0.45 +2.0
288,841 - CSW01_01450 0.45 +0.5
288,870 + CSW01_01450 0.47 +0.1
288,870 + CSW01_01450 0.47 +0.2
288,878 - CSW01_01450 0.47 +0.2
288,878 - CSW01_01450 0.47 -0.1
288,878 - CSW01_01450 0.47 +0.7
288,878 - CSW01_01450 0.47 +0.1
288,958 + CSW01_01450 0.52 -0.5
288,958 + CSW01_01450 0.52 +0.4
288,958 + CSW01_01450 0.52 -0.0
288,958 + CSW01_01450 0.52 +0.9
288,958 + CSW01_01450 0.52 +0.1
288,958 + CSW01_01450 0.52 -0.1
288,966 - CSW01_01450 0.52 +0.7
288,966 - CSW01_01450 0.52 +0.3
289,033 - CSW01_01450 0.56 -0.1
289,075 + CSW01_01450 0.59 +2.1
289,083 - CSW01_01450 0.59 +0.1
289,145 - CSW01_01450 0.63 +0.0
289,145 - CSW01_01450 0.63 +0.5
289,145 - CSW01_01450 0.63 +0.9
289,147 + CSW01_01450 0.63 -0.2
289,147 + CSW01_01450 0.63 -0.2
289,155 - CSW01_01450 0.64 -0.0
289,155 - CSW01_01450 0.64 -0.1
289,224 + CSW01_01450 0.68 +0.5
289,224 + CSW01_01450 0.68 -0.8
289,224 + CSW01_01450 0.68 -1.5
289,232 - CSW01_01450 0.68 +0.5
289,232 - CSW01_01450 0.68 +0.1
289,232 - CSW01_01450 0.68 -0.7
289,232 - CSW01_01450 0.68 -0.3
289,232 - CSW01_01450 0.68 -0.3
289,232 - CSW01_01450 0.68 +1.6
289,232 - CSW01_01450 0.68 -0.5
289,232 - CSW01_01450 0.68 -0.0
289,283 - CSW01_01450 0.71 -0.3
289,294 + CSW01_01450 0.72 +0.9
289,294 + CSW01_01450 0.72 +1.7
289,294 + CSW01_01450 0.72 -1.1
289,302 - CSW01_01450 0.72 +0.1
289,340 + CSW01_01450 0.75 -0.5
289,348 - CSW01_01450 0.75 +0.5
289,348 - CSW01_01450 0.75 -0.6
289,363 + CSW01_01450 0.76 -0.1
289,363 + CSW01_01450 0.76 +0.6
289,363 + CSW01_01450 0.76 -0.4
289,363 + CSW01_01450 0.76 +1.3
289,363 + CSW01_01450 0.76 -0.6
289,363 + CSW01_01450 0.76 -2.1
289,371 - CSW01_01450 0.77 +0.1
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 +0.2
289,371 - CSW01_01450 0.77 +0.6
289,371 - CSW01_01450 0.77 -0.4
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 -0.4
289,371 - CSW01_01450 0.77 -0.1
289,381 - CSW01_01450 0.77 -0.6
289,381 - CSW01_01450 0.77 -1.4
289,403 + CSW01_01450 0.78 -0.7
289,469 + CSW01_01450 0.82 -0.4
289,504 - CSW01_01450 0.85 +0.6
289,523 + CSW01_01450 0.86 +0.3
289,523 + CSW01_01450 0.86 +0.2
289,523 + CSW01_01450 0.86 -0.2
289,531 - CSW01_01450 0.86 -0.0
289,531 - CSW01_01450 0.86 -1.1
289,531 - CSW01_01450 0.86 -0.5
289,537 + CSW01_01450 0.86 -1.9
289,537 + CSW01_01450 0.86 -0.2
289,542 + CSW01_01450 0.87 -0.1
289,542 + CSW01_01450 0.87 -0.1
289,547 + CSW01_01450 0.87 +0.8
289,550 - CSW01_01450 0.87 -0.1
289,569 - CSW01_01450 0.88 +0.3
289,625 + +0.0
289,717 + +0.1
289,717 + +0.1
289,717 + -0.3
289,725 - -0.2
289,728 + -0.1
289,743 + +0.1
289,751 - +0.1
289,780 + +0.4
289,835 + +0.2
289,843 + +2.0
289,843 + -0.6
289,879 + +0.6
289,925 + -0.2
289,934 + -0.3
289,949 - -0.5
290,017 + +0.3
290,077 - CSW01_01455 0.12 -0.4
290,077 - CSW01_01455 0.12 +0.2
290,089 + CSW01_01455 0.14 -0.4
290,094 + CSW01_01455 0.14 +0.4
290,104 + CSW01_01455 0.16 +0.2
290,153 + CSW01_01455 0.23 -0.2
290,160 + CSW01_01455 0.24 +0.0
290,161 - CSW01_01455 0.24 -0.1
290,184 + CSW01_01455 0.28 +0.7
290,186 + CSW01_01455 0.28 -0.9
290,231 - CSW01_01455 0.35 -2.0
290,272 - CSW01_01455 0.41 -0.0
290,275 + CSW01_01455 0.41 +2.3
290,287 - CSW01_01455 0.43 +0.7
290,320 + CSW01_01455 0.48 -0.1
290,320 + CSW01_01455 0.48 -0.1
290,328 - CSW01_01455 0.49 +1.7
290,380 + CSW01_01455 0.56 -0.4
290,385 + CSW01_01455 0.57 -0.7
290,393 - CSW01_01455 0.58 +0.3
290,393 - CSW01_01455 0.58 -0.5
290,393 - CSW01_01455 0.58 +0.1
290,398 - CSW01_01455 0.59 -0.2
290,414 - CSW01_01455 0.62 -0.1
290,428 - CSW01_01455 0.64 +0.7
290,517 + CSW01_01455 0.77 +0.6
290,525 - CSW01_01455 0.78 +0.0
290,525 - CSW01_01455 0.78 -0.1
290,539 + CSW01_01455 0.80 -0.2
290,585 - CSW01_01455 0.87 -1.9
290,585 - CSW01_01455 0.87 +0.6
290,596 - CSW01_01455 0.88 -0.3
290,596 - CSW01_01455 0.88 +0.6
290,596 - CSW01_01455 0.88 -0.4
290,607 - -0.5
290,632 + +1.3
290,637 + -0.0
290,642 + +0.2
290,648 + -2.1
290,654 + -0.2
290,654 - +0.0
290,701 - -0.1
290,739 - +0.1

Or see this region's nucleotide sequence