Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01155

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01150 and CSW01_01155 are separated by 111 nucleotidesCSW01_01155 and CSW01_01160 are separated by 294 nucleotidesCSW01_01160 and CSW01_01165 are separated by 13 nucleotidesCSW01_01165 and CSW01_01170 are separated by 220 nucleotides CSW01_01150: CSW01_01150 - methyl-accepting chemotaxis protein, at 223,455 to 225,149 _01150 CSW01_01155: CSW01_01155 - DNA repair protein RadC, at 225,261 to 225,935 _01155 CSW01_01160: CSW01_01160 - 50S ribosomal protein L28, at 226,230 to 226,466 _01160 CSW01_01165: CSW01_01165 - 50S ribosomal protein L33, at 226,480 to 226,647 _01165 CSW01_01170: CSW01_01170 - hypothetical protein, at 226,868 to 227,356 _01170 Position (kb) 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 224.276 kb on + strand, within CSW01_01150at 224.306 kb on + strand, within CSW01_01150at 224.319 kb on + strand, within CSW01_01150at 224.366 kb on - strand, within CSW01_01150at 224.382 kb on - strand, within CSW01_01150at 224.442 kb on + strand, within CSW01_01150at 224.447 kb on - strand, within CSW01_01150at 224.457 kb on - strand, within CSW01_01150at 224.471 kb on + strand, within CSW01_01150at 224.476 kb on + strand, within CSW01_01150at 224.540 kb on + strand, within CSW01_01150at 224.568 kb on + strand, within CSW01_01150at 224.601 kb on + strand, within CSW01_01150at 224.633 kb on + strand, within CSW01_01150at 224.702 kb on + strand, within CSW01_01150at 224.711 kb on + strand, within CSW01_01150at 224.724 kb on + strand, within CSW01_01150at 224.732 kb on - strand, within CSW01_01150at 224.737 kb on + strand, within CSW01_01150at 224.737 kb on + strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.757 kb on + strand, within CSW01_01150at 224.769 kb on + strand, within CSW01_01150at 224.771 kb on + strand, within CSW01_01150at 224.781 kb on + strand, within CSW01_01150at 224.794 kb on - strand, within CSW01_01150at 224.799 kb on - strand, within CSW01_01150at 224.799 kb on - strand, within CSW01_01150at 224.821 kb on - strand, within CSW01_01150at 224.827 kb on + strand, within CSW01_01150at 224.834 kb on + strand, within CSW01_01150at 224.844 kb on + strand, within CSW01_01150at 224.847 kb on + strand, within CSW01_01150at 224.850 kb on - strand, within CSW01_01150at 224.856 kb on + strand, within CSW01_01150at 224.861 kb on + strand, within CSW01_01150at 224.861 kb on - strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.915 kb on - strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.952 kb on - strand, within CSW01_01150at 224.954 kb on + strand, within CSW01_01150at 224.981 kb on - strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.074 kb on + strandat 225.082 kb on - strandat 225.088 kb on + strandat 225.096 kb on - strandat 225.096 kb on - strandat 225.096 kb on - strandat 225.258 kb on + strandat 225.265 kb on + strandat 225.334 kb on - strand, within CSW01_01155at 225.337 kb on + strand, within CSW01_01155at 225.373 kb on + strand, within CSW01_01155at 225.379 kb on + strand, within CSW01_01155at 225.392 kb on + strand, within CSW01_01155at 225.395 kb on - strand, within CSW01_01155at 225.400 kb on - strand, within CSW01_01155at 225.440 kb on + strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.538 kb on - strand, within CSW01_01155at 225.555 kb on - strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.574 kb on + strand, within CSW01_01155at 225.632 kb on + strand, within CSW01_01155at 225.720 kb on - strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.806 kb on + strand, within CSW01_01155at 225.816 kb on + strand, within CSW01_01155at 225.821 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.853 kb on + strand, within CSW01_01155at 225.859 kb on - strand, within CSW01_01155at 225.910 kb on + strandat 225.934 kb on + strandat 225.934 kb on + strandat 225.942 kb on - strandat 225.948 kb on - strandat 226.536 kb on + strand, within CSW01_01165at 226.745 kb on + strandat 226.745 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.753 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.857 kb on - strandat 226.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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224,276 + CSW01_01150 0.48 -1.3
224,306 + CSW01_01150 0.50 -0.4
224,319 + CSW01_01150 0.51 +0.7
224,366 - CSW01_01150 0.54 +0.4
224,382 - CSW01_01150 0.55 +0.4
224,442 + CSW01_01150 0.58 -0.2
224,447 - CSW01_01150 0.59 -0.3
224,457 - CSW01_01150 0.59 -0.2
224,471 + CSW01_01150 0.60 +0.0
224,476 + CSW01_01150 0.60 +0.0
224,540 + CSW01_01150 0.64 -0.3
224,568 + CSW01_01150 0.66 -0.1
224,601 + CSW01_01150 0.68 -1.4
224,633 + CSW01_01150 0.69 -0.7
224,702 + CSW01_01150 0.74 +0.2
224,711 + CSW01_01150 0.74 +0.2
224,724 + CSW01_01150 0.75 -1.8
224,732 - CSW01_01150 0.75 -0.4
224,737 + CSW01_01150 0.76 -0.7
224,737 + CSW01_01150 0.76 +0.8
224,745 - CSW01_01150 0.76 +0.5
224,745 - CSW01_01150 0.76 -0.5
224,745 - CSW01_01150 0.76 -0.6
224,745 - CSW01_01150 0.76 +0.2
224,757 + CSW01_01150 0.77 +0.6
224,769 + CSW01_01150 0.78 -0.1
224,771 + CSW01_01150 0.78 +0.7
224,781 + CSW01_01150 0.78 +0.7
224,794 - CSW01_01150 0.79 +2.3
224,799 - CSW01_01150 0.79 +0.3
224,799 - CSW01_01150 0.79 +0.3
224,821 - CSW01_01150 0.81 -0.2
224,827 + CSW01_01150 0.81 +0.6
224,834 + CSW01_01150 0.81 -0.0
224,844 + CSW01_01150 0.82 +0.7
224,847 + CSW01_01150 0.82 +0.1
224,850 - CSW01_01150 0.82 +0.1
224,856 + CSW01_01150 0.83 +0.2
224,861 + CSW01_01150 0.83 -1.0
224,861 - CSW01_01150 0.83 +0.8
224,906 + CSW01_01150 0.86 -0.3
224,906 + CSW01_01150 0.86 +0.0
224,906 + CSW01_01150 0.86 +0.4
224,915 - CSW01_01150 0.86 -0.0
224,930 + CSW01_01150 0.87 +0.2
224,930 + CSW01_01150 0.87 -0.1
224,930 + CSW01_01150 0.87 -0.8
224,938 - CSW01_01150 0.87 -0.6
224,938 - CSW01_01150 0.87 -0.1
224,938 - CSW01_01150 0.87 +0.8
224,938 - CSW01_01150 0.87 -1.3
224,938 - CSW01_01150 0.87 -0.2
224,938 - CSW01_01150 0.87 -0.4
224,952 - CSW01_01150 0.88 -0.2
224,954 + CSW01_01150 0.88 +0.8
224,981 - -0.1
225,064 + -0.8
225,064 + +0.3
225,064 + -0.6
225,064 + +0.7
225,064 + -0.8
225,064 + +0.0
225,064 + +0.8
225,064 + -0.2
225,064 + -0.0
225,064 + +0.1
225,064 + +0.6
225,064 + +0.1
225,064 + +1.2
225,064 + -0.1
225,064 + -0.3
225,064 + +0.2
225,064 + +0.1
225,064 + +1.3
225,072 - +1.2
225,072 - -0.2
225,072 - -0.8
225,072 - +0.5
225,072 - +0.3
225,072 - +0.1
225,072 - +0.4
225,072 - -0.8
225,072 - +0.1
225,072 - +1.8
225,072 - +0.3
225,072 - +1.2
225,072 - +0.0
225,072 - +0.0
225,072 - +0.3
225,072 - +0.1
225,072 - -0.0
225,072 - -0.2
225,072 - +1.0
225,072 - +0.3
225,072 - +0.4
225,072 - -0.0
225,072 - +0.1
225,072 - +0.1
225,072 - -0.6
225,072 - +0.7
225,072 - -0.4
225,072 - -0.8
225,072 - -0.2
225,072 - +0.5
225,072 - -0.3
225,074 + -0.5
225,082 - -1.8
225,088 + +0.5
225,096 - +0.3
225,096 - +0.0
225,096 - -1.0
225,258 + +0.9
225,265 + -1.1
225,334 - CSW01_01155 0.11 -0.7
225,337 + CSW01_01155 0.11 -0.2
225,373 + CSW01_01155 0.17 -0.2
225,379 + CSW01_01155 0.17 +0.1
225,392 + CSW01_01155 0.19 -0.8
225,395 - CSW01_01155 0.20 -0.5
225,400 - CSW01_01155 0.21 +0.1
225,440 + CSW01_01155 0.27 +0.4
225,448 - CSW01_01155 0.28 +1.0
225,448 - CSW01_01155 0.28 -0.3
225,448 - CSW01_01155 0.28 +0.4
225,448 - CSW01_01155 0.28 +0.8
225,477 + CSW01_01155 0.32 +0.0
225,477 + CSW01_01155 0.32 +0.2
225,477 + CSW01_01155 0.32 +0.3
225,477 + CSW01_01155 0.32 +0.8
225,485 - CSW01_01155 0.33 +0.9
225,485 - CSW01_01155 0.33 -1.0
225,485 - CSW01_01155 0.33 -1.1
225,485 - CSW01_01155 0.33 -0.6
225,513 + CSW01_01155 0.37 +1.1
225,513 + CSW01_01155 0.37 +0.8
225,530 + CSW01_01155 0.40 -0.4
225,530 + CSW01_01155 0.40 +0.0
225,530 + CSW01_01155 0.40 +0.4
225,538 - CSW01_01155 0.41 +0.0
225,555 - CSW01_01155 0.44 -0.3
225,559 + CSW01_01155 0.44 -0.8
225,559 + CSW01_01155 0.44 +0.4
225,564 + CSW01_01155 0.45 +0.5
225,564 + CSW01_01155 0.45 -0.5
225,564 + CSW01_01155 0.45 -0.3
225,564 + CSW01_01155 0.45 -0.8
225,564 + CSW01_01155 0.45 -0.5
225,564 + CSW01_01155 0.45 -0.1
225,567 - CSW01_01155 0.45 -1.2
225,567 - CSW01_01155 0.45 -1.6
225,569 + CSW01_01155 0.46 +0.3
225,569 + CSW01_01155 0.46 +0.4
225,572 - CSW01_01155 0.46 +2.6
225,572 - CSW01_01155 0.46 -0.0
225,572 - CSW01_01155 0.46 +0.0
225,572 - CSW01_01155 0.46 -0.6
225,574 + CSW01_01155 0.46 -0.7
225,632 + CSW01_01155 0.55 +0.1
225,720 - CSW01_01155 0.68 -0.1
225,749 + CSW01_01155 0.72 +2.0
225,749 + CSW01_01155 0.72 -0.8
225,757 - CSW01_01155 0.73 -0.4
225,757 - CSW01_01155 0.73 +0.4
225,757 - CSW01_01155 0.73 +0.1
225,757 - CSW01_01155 0.73 -0.5
225,806 + CSW01_01155 0.81 -1.0
225,816 + CSW01_01155 0.82 -0.9
225,821 + CSW01_01155 0.83 +0.2
225,829 + CSW01_01155 0.84 +0.2
225,829 + CSW01_01155 0.84 -0.0
225,853 + CSW01_01155 0.88 +0.1
225,859 - CSW01_01155 0.89 -0.3
225,910 + +0.3
225,934 + -0.2
225,934 + +0.3
225,942 - -0.7
225,948 - -0.2
226,536 + CSW01_01165 0.33 -1.1
226,745 + -0.0
226,745 + -0.8
226,752 + -2.0
226,752 + +0.5
226,752 + +1.0
226,753 - +0.3
226,760 - +0.4
226,760 - -0.0
226,760 - -0.2
226,760 - -0.1
226,760 - +1.0
226,857 - +0.2
226,900 + +0.4

Or see this region's nucleotide sequence