Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00690

Experiment: LB_Aerobic_180MIN_ZN14A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00685 and CSW01_00690 are separated by 74 nucleotidesCSW01_00690 and CSW01_00695 are separated by 19 nucleotides CSW01_00685: CSW01_00685 - lysophospholipase, at 129,658 to 130,674 _00685 CSW01_00690: CSW01_00690 - homoserine/homoserine lactone efflux protein, at 130,749 to 131,366 _00690 CSW01_00695: CSW01_00695 - EAL domain-containing protein, at 131,386 to 132,612 _00695 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 129.787 kb on + strand, within CSW01_00685at 129.787 kb on + strand, within CSW01_00685at 129.787 kb on + strand, within CSW01_00685at 129.845 kb on + strand, within CSW01_00685at 129.845 kb on + strand, within CSW01_00685at 129.922 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.933 kb on + strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.941 kb on - strand, within CSW01_00685at 129.945 kb on + strand, within CSW01_00685at 129.980 kb on + strand, within CSW01_00685at 129.992 kb on + strand, within CSW01_00685at 129.992 kb on + strand, within CSW01_00685at 129.992 kb on + strand, within CSW01_00685at 130.000 kb on - strand, within CSW01_00685at 130.058 kb on + strand, within CSW01_00685at 130.066 kb on - strand, within CSW01_00685at 130.066 kb on - strand, within CSW01_00685at 130.066 kb on - strand, within CSW01_00685at 130.139 kb on + strand, within CSW01_00685at 130.139 kb on + strand, within CSW01_00685at 130.147 kb on - strand, within CSW01_00685at 130.154 kb on - strand, within CSW01_00685at 130.177 kb on + strand, within CSW01_00685at 130.177 kb on + strand, within CSW01_00685at 130.186 kb on + strand, within CSW01_00685at 130.187 kb on + strand, within CSW01_00685at 130.187 kb on + strand, within CSW01_00685at 130.187 kb on + strand, within CSW01_00685at 130.187 kb on + strand, within CSW01_00685at 130.194 kb on - strand, within CSW01_00685at 130.195 kb on - strand, within CSW01_00685at 130.195 kb on - strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.222 kb on + strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.230 kb on - strand, within CSW01_00685at 130.328 kb on + strand, within CSW01_00685at 130.347 kb on + strand, within CSW01_00685at 130.383 kb on - strand, within CSW01_00685at 130.401 kb on - strand, within CSW01_00685at 130.475 kb on + strand, within CSW01_00685at 130.483 kb on - strand, within CSW01_00685at 130.520 kb on + strand, within CSW01_00685at 130.612 kb on + strandat 130.620 kb on - strandat 130.669 kb on + strandat 130.677 kb on - strandat 130.677 kb on - strandat 130.677 kb on - strandat 130.710 kb on - strandat 130.711 kb on - strandat 130.713 kb on + strandat 130.721 kb on - strandat 130.819 kb on + strand, within CSW01_00690at 130.827 kb on - strand, within CSW01_00690at 130.839 kb on + strand, within CSW01_00690at 130.839 kb on + strand, within CSW01_00690at 130.839 kb on + strand, within CSW01_00690at 130.839 kb on + strand, within CSW01_00690at 130.840 kb on + strand, within CSW01_00690at 130.847 kb on - strand, within CSW01_00690at 130.847 kb on - strand, within CSW01_00690at 130.852 kb on + strand, within CSW01_00690at 130.864 kb on + strand, within CSW01_00690at 130.864 kb on + strand, within CSW01_00690at 130.864 kb on + strand, within CSW01_00690at 130.872 kb on - strand, within CSW01_00690at 130.872 kb on - strand, within CSW01_00690at 130.921 kb on + strand, within CSW01_00690at 130.930 kb on - strand, within CSW01_00690at 131.084 kb on + strand, within CSW01_00690at 131.084 kb on + strand, within CSW01_00690at 131.084 kb on + strand, within CSW01_00690at 131.084 kb on + strand, within CSW01_00690at 131.089 kb on + strand, within CSW01_00690at 131.089 kb on + strand, within CSW01_00690at 131.092 kb on - strand, within CSW01_00690at 131.092 kb on - strand, within CSW01_00690at 131.092 kb on - strand, within CSW01_00690at 131.102 kb on - strand, within CSW01_00690at 131.103 kb on + strand, within CSW01_00690at 131.181 kb on + strand, within CSW01_00690at 131.186 kb on + strand, within CSW01_00690at 131.186 kb on + strand, within CSW01_00690at 131.194 kb on - strand, within CSW01_00690at 131.223 kb on - strand, within CSW01_00690at 131.234 kb on - strand, within CSW01_00690at 131.335 kb on + strandat 131.335 kb on + strandat 131.372 kb on + strandat 131.372 kb on + strandat 131.380 kb on - strandat 131.385 kb on + strandat 131.388 kb on + strandat 131.396 kb on - strandat 131.426 kb on - strandat 131.444 kb on + strandat 131.444 kb on + strandat 131.444 kb on + strandat 131.444 kb on + strandat 131.444 kb on + strandat 131.444 kb on + strandat 131.452 kb on - strandat 131.452 kb on - strandat 131.452 kb on - strandat 131.452 kb on - strandat 131.452 kb on - strandat 131.488 kb on + strandat 131.493 kb on + strandat 131.498 kb on - strandat 131.556 kb on + strand, within CSW01_00695at 131.587 kb on - strand, within CSW01_00695at 131.603 kb on + strand, within CSW01_00695at 131.674 kb on - strand, within CSW01_00695at 131.696 kb on + strand, within CSW01_00695at 131.706 kb on - strand, within CSW01_00695at 131.713 kb on - strand, within CSW01_00695at 131.732 kb on + strand, within CSW01_00695at 131.835 kb on + strand, within CSW01_00695at 131.847 kb on - strand, within CSW01_00695at 131.861 kb on - strand, within CSW01_00695at 131.929 kb on + strand, within CSW01_00695at 131.937 kb on - strand, within CSW01_00695at 131.972 kb on + strand, within CSW01_00695at 131.980 kb on - strand, within CSW01_00695at 131.980 kb on - strand, within CSW01_00695at 131.980 kb on - strand, within CSW01_00695at 131.982 kb on + strand, within CSW01_00695at 131.991 kb on - strand, within CSW01_00695at 131.993 kb on + strand, within CSW01_00695at 131.998 kb on + strand, within CSW01_00695at 131.998 kb on + strand, within CSW01_00695at 132.001 kb on - strand, within CSW01_00695at 132.047 kb on - strand, within CSW01_00695at 132.074 kb on - strand, within CSW01_00695at 132.083 kb on + strand, within CSW01_00695at 132.095 kb on + strand, within CSW01_00695at 132.095 kb on + strand, within CSW01_00695at 132.128 kb on - strand, within CSW01_00695at 132.128 kb on - strand, within CSW01_00695at 132.166 kb on + strand, within CSW01_00695at 132.166 kb on + strand, within CSW01_00695at 132.176 kb on + strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.184 kb on - strand, within CSW01_00695at 132.233 kb on + strand, within CSW01_00695at 132.275 kb on - strand, within CSW01_00695at 132.302 kb on + strand, within CSW01_00695

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14A
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129,787 + CSW01_00685 0.13 +0.2
129,787 + CSW01_00685 0.13 -0.1
129,787 + CSW01_00685 0.13 -0.7
129,845 + CSW01_00685 0.18 -0.3
129,845 + CSW01_00685 0.18 +0.7
129,922 + CSW01_00685 0.26 -0.1
129,933 + CSW01_00685 0.27 +0.6
129,933 + CSW01_00685 0.27 +0.1
129,933 + CSW01_00685 0.27 +1.1
129,933 + CSW01_00685 0.27 +0.2
129,933 + CSW01_00685 0.27 +0.8
129,933 + CSW01_00685 0.27 -0.4
129,933 + CSW01_00685 0.27 -1.9
129,933 + CSW01_00685 0.27 +0.2
129,933 + CSW01_00685 0.27 -0.4
129,933 + CSW01_00685 0.27 +1.4
129,933 + CSW01_00685 0.27 -0.1
129,933 + CSW01_00685 0.27 +0.7
129,941 - CSW01_00685 0.28 -0.2
129,941 - CSW01_00685 0.28 +0.3
129,941 - CSW01_00685 0.28 +1.0
129,941 - CSW01_00685 0.28 +0.9
129,941 - CSW01_00685 0.28 -0.1
129,941 - CSW01_00685 0.28 -0.9
129,941 - CSW01_00685 0.28 +0.3
129,941 - CSW01_00685 0.28 +1.0
129,941 - CSW01_00685 0.28 +0.1
129,941 - CSW01_00685 0.28 -0.1
129,941 - CSW01_00685 0.28 +0.0
129,941 - CSW01_00685 0.28 +0.1
129,941 - CSW01_00685 0.28 -0.0
129,941 - CSW01_00685 0.28 -1.0
129,941 - CSW01_00685 0.28 +1.0
129,945 + CSW01_00685 0.28 +0.4
129,980 + CSW01_00685 0.32 -0.2
129,992 + CSW01_00685 0.33 +1.3
129,992 + CSW01_00685 0.33 +1.0
129,992 + CSW01_00685 0.33 +1.2
130,000 - CSW01_00685 0.34 +0.2
130,058 + CSW01_00685 0.39 +1.5
130,066 - CSW01_00685 0.40 -1.3
130,066 - CSW01_00685 0.40 +0.0
130,066 - CSW01_00685 0.40 -0.1
130,139 + CSW01_00685 0.47 +0.1
130,139 + CSW01_00685 0.47 +0.5
130,147 - CSW01_00685 0.48 -1.5
130,154 - CSW01_00685 0.49 +0.2
130,177 + CSW01_00685 0.51 +0.1
130,177 + CSW01_00685 0.51 +0.9
130,186 + CSW01_00685 0.52 +0.3
130,187 + CSW01_00685 0.52 +0.1
130,187 + CSW01_00685 0.52 -0.2
130,187 + CSW01_00685 0.52 +0.0
130,187 + CSW01_00685 0.52 +0.3
130,194 - CSW01_00685 0.53 -1.2
130,195 - CSW01_00685 0.53 +0.0
130,195 - CSW01_00685 0.53 +0.1
130,222 + CSW01_00685 0.55 -0.5
130,222 + CSW01_00685 0.55 -0.6
130,222 + CSW01_00685 0.55 +0.0
130,222 + CSW01_00685 0.55 +1.1
130,222 + CSW01_00685 0.55 +0.2
130,222 + CSW01_00685 0.55 +0.7
130,222 + CSW01_00685 0.55 +0.0
130,222 + CSW01_00685 0.55 +0.0
130,230 - CSW01_00685 0.56 -0.1
130,230 - CSW01_00685 0.56 +0.8
130,230 - CSW01_00685 0.56 -0.1
130,230 - CSW01_00685 0.56 +0.5
130,230 - CSW01_00685 0.56 +0.3
130,230 - CSW01_00685 0.56 +0.1
130,230 - CSW01_00685 0.56 +2.4
130,230 - CSW01_00685 0.56 -0.6
130,230 - CSW01_00685 0.56 +0.3
130,230 - CSW01_00685 0.56 +0.2
130,230 - CSW01_00685 0.56 +0.4
130,328 + CSW01_00685 0.66 +0.0
130,347 + CSW01_00685 0.68 -1.0
130,383 - CSW01_00685 0.71 +0.6
130,401 - CSW01_00685 0.73 +0.5
130,475 + CSW01_00685 0.80 +0.1
130,483 - CSW01_00685 0.81 +0.4
130,520 + CSW01_00685 0.85 +0.6
130,612 + -0.0
130,620 - +0.8
130,669 + +0.9
130,677 - -0.3
130,677 - +0.4
130,677 - +0.2
130,710 - -1.2
130,711 - -0.8
130,713 + -0.5
130,721 - +1.2
130,819 + CSW01_00690 0.11 +0.2
130,827 - CSW01_00690 0.13 +1.9
130,839 + CSW01_00690 0.15 -0.0
130,839 + CSW01_00690 0.15 -0.7
130,839 + CSW01_00690 0.15 +0.4
130,839 + CSW01_00690 0.15 +0.5
130,840 + CSW01_00690 0.15 -0.2
130,847 - CSW01_00690 0.16 +1.0
130,847 - CSW01_00690 0.16 -0.4
130,852 + CSW01_00690 0.17 -0.2
130,864 + CSW01_00690 0.19 +0.3
130,864 + CSW01_00690 0.19 +0.3
130,864 + CSW01_00690 0.19 +0.1
130,872 - CSW01_00690 0.20 +0.2
130,872 - CSW01_00690 0.20 +0.5
130,921 + CSW01_00690 0.28 +0.4
130,930 - CSW01_00690 0.29 +0.2
131,084 + CSW01_00690 0.54 +0.2
131,084 + CSW01_00690 0.54 +0.2
131,084 + CSW01_00690 0.54 +1.1
131,084 + CSW01_00690 0.54 +1.2
131,089 + CSW01_00690 0.55 -0.7
131,089 + CSW01_00690 0.55 +0.4
131,092 - CSW01_00690 0.56 +1.0
131,092 - CSW01_00690 0.56 -0.2
131,092 - CSW01_00690 0.56 -0.0
131,102 - CSW01_00690 0.57 -0.4
131,103 + CSW01_00690 0.57 -0.7
131,181 + CSW01_00690 0.70 +0.4
131,186 + CSW01_00690 0.71 -2.8
131,186 + CSW01_00690 0.71 +0.8
131,194 - CSW01_00690 0.72 +0.2
131,223 - CSW01_00690 0.77 -1.8
131,234 - CSW01_00690 0.78 -0.6
131,335 + -0.1
131,335 + +0.8
131,372 + -1.4
131,372 + -0.1
131,380 - -0.8
131,385 + -1.7
131,388 + +0.5
131,396 - +0.0
131,426 - +0.6
131,444 + +0.1
131,444 + -0.4
131,444 + -1.0
131,444 + -0.2
131,444 + +0.0
131,444 + +0.8
131,452 - -0.2
131,452 - -1.2
131,452 - +0.7
131,452 - -2.1
131,452 - +0.1
131,488 + -0.3
131,493 + +0.7
131,498 - +0.2
131,556 + CSW01_00695 0.14 +0.9
131,587 - CSW01_00695 0.16 -0.6
131,603 + CSW01_00695 0.18 +0.8
131,674 - CSW01_00695 0.23 -0.5
131,696 + CSW01_00695 0.25 +0.5
131,706 - CSW01_00695 0.26 +1.1
131,713 - CSW01_00695 0.27 -0.2
131,732 + CSW01_00695 0.28 +0.4
131,835 + CSW01_00695 0.37 +3.1
131,847 - CSW01_00695 0.38 -0.1
131,861 - CSW01_00695 0.39 +2.0
131,929 + CSW01_00695 0.44 -2.5
131,937 - CSW01_00695 0.45 -0.8
131,972 + CSW01_00695 0.48 +0.8
131,980 - CSW01_00695 0.48 +0.2
131,980 - CSW01_00695 0.48 -1.3
131,980 - CSW01_00695 0.48 +1.4
131,982 + CSW01_00695 0.49 +0.3
131,991 - CSW01_00695 0.49 +0.7
131,993 + CSW01_00695 0.49 +0.4
131,998 + CSW01_00695 0.50 +1.1
131,998 + CSW01_00695 0.50 -0.0
132,001 - CSW01_00695 0.50 -0.8
132,047 - CSW01_00695 0.54 -0.7
132,074 - CSW01_00695 0.56 +0.2
132,083 + CSW01_00695 0.57 -0.8
132,095 + CSW01_00695 0.58 -0.0
132,095 + CSW01_00695 0.58 +0.2
132,128 - CSW01_00695 0.60 -0.1
132,128 - CSW01_00695 0.60 +0.5
132,166 + CSW01_00695 0.64 -0.4
132,166 + CSW01_00695 0.64 +0.3
132,176 + CSW01_00695 0.64 -0.3
132,184 - CSW01_00695 0.65 +0.1
132,184 - CSW01_00695 0.65 +0.5
132,184 - CSW01_00695 0.65 -0.1
132,184 - CSW01_00695 0.65 -0.4
132,184 - CSW01_00695 0.65 -0.3
132,184 - CSW01_00695 0.65 -1.0
132,233 + CSW01_00695 0.69 -0.2
132,275 - CSW01_00695 0.72 +0.8
132,302 + CSW01_00695 0.75 +0.9

Or see this region's nucleotide sequence