Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28435

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28425 and AO356_28430 are separated by 114 nucleotidesAO356_28430 and AO356_28435 are separated by 153 nucleotidesAO356_28435 and AO356_28440 are separated by 15 nucleotides AO356_28425: AO356_28425 - hypothetical protein, at 6,609,930 to 6,610,556 _28425 AO356_28430: AO356_28430 - hypothetical protein, at 6,610,671 to 6,611,048 _28430 AO356_28435: AO356_28435 - SAM-dependent methyltransferase, at 6,611,202 to 6,611,897 _28435 AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839 _28440 Position (kb) 6611 6612Strain fitness (log2 ratio) -1 0 1at 6610.293 kb on + strand, within AO356_28425at 6610.293 kb on + strand, within AO356_28425at 6610.293 kb on + strand, within AO356_28425at 6610.354 kb on + strand, within AO356_28425at 6610.354 kb on + strand, within AO356_28425at 6610.423 kb on + strand, within AO356_28425at 6610.571 kb on + strandat 6610.572 kb on - strandat 6610.801 kb on - strand, within AO356_28430at 6610.906 kb on - strand, within AO356_28430at 6610.965 kb on + strand, within AO356_28430at 6610.989 kb on - strand, within AO356_28430at 6611.018 kb on + strandat 6611.018 kb on + strandat 6611.019 kb on - strandat 6611.380 kb on + strand, within AO356_28435at 6611.380 kb on + strand, within AO356_28435at 6611.398 kb on + strand, within AO356_28435at 6611.441 kb on - strand, within AO356_28435at 6611.849 kb on + strandat 6612.034 kb on + strand, within AO356_28440

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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6,610,293 + AO356_28425 0.58 -0.2
6,610,293 + AO356_28425 0.58 -0.5
6,610,293 + AO356_28425 0.58 +0.9
6,610,354 + AO356_28425 0.68 -0.9
6,610,354 + AO356_28425 0.68 +0.1
6,610,423 + AO356_28425 0.79 +1.2
6,610,571 + -0.9
6,610,572 - -0.7
6,610,801 - AO356_28430 0.34 +0.1
6,610,906 - AO356_28430 0.62 -0.5
6,610,965 + AO356_28430 0.78 -0.8
6,610,989 - AO356_28430 0.84 -0.2
6,611,018 + -0.1
6,611,018 + -0.1
6,611,019 - -0.7
6,611,380 + AO356_28435 0.26 -0.3
6,611,380 + AO356_28435 0.26 +1.1
6,611,398 + AO356_28435 0.28 +0.8
6,611,441 - AO356_28435 0.34 +0.9
6,611,849 + -0.1
6,612,034 + AO356_28440 0.13 +1.0

Or see this region's nucleotide sequence