Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20195 and AO356_20200 are separated by 49 nucleotides AO356_20200 and AO356_20205 are separated by 11 nucleotides AO356_20205 and AO356_20210 are separated by 384 nucleotides
AO356_20195: AO356_20195 - DNA polymerase III subunit delta', at 4,516,641 to 4,517,627
_20195
AO356_20200: AO356_20200 - pilus assembly protein PilZ, at 4,517,677 to 4,518,033
_20200
AO356_20205: AO356_20205 - hydrolase TatD, at 4,518,045 to 4,518,839
_20205
AO356_20210: AO356_20210 - TetR family transcriptional regulator, at 4,519,224 to 4,519,862
_20210
Position (kb) 4518
4519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4517.643 kb on + strand at 4517.643 kb on + strand at 4517.643 kb on + strand at 4517.643 kb on + strand at 4517.643 kb on + strand at 4517.644 kb on - strand at 4517.646 kb on + strand at 4517.647 kb on - strand at 4517.647 kb on - strand at 4517.647 kb on - strand at 4517.749 kb on + strand, within AO356_20200 at 4517.750 kb on - strand, within AO356_20200 at 4517.750 kb on - strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.758 kb on + strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.759 kb on - strand, within AO356_20200 at 4517.934 kb on - strand, within AO356_20200 at 4518.024 kb on + strand at 4518.024 kb on + strand at 4518.024 kb on + strand at 4518.024 kb on + strand at 4518.025 kb on - strand at 4518.031 kb on + strand at 4518.031 kb on + strand at 4518.031 kb on + strand at 4518.031 kb on + strand at 4518.031 kb on + strand at 4518.031 kb on + strand at 4518.032 kb on - strand at 4518.032 kb on - strand at 4518.032 kb on - strand at 4518.044 kb on + strand at 4518.044 kb on + strand at 4518.044 kb on + strand at 4518.044 kb on + strand at 4518.044 kb on + strand at 4518.044 kb on + strand at 4518.045 kb on - strand at 4518.045 kb on - strand at 4518.045 kb on - strand at 4518.045 kb on - strand at 4518.045 kb on - strand at 4518.052 kb on + strand at 4518.052 kb on + strand at 4518.053 kb on - strand at 4518.053 kb on - strand at 4518.211 kb on - strand, within AO356_20205 at 4518.342 kb on + strand, within AO356_20205 at 4518.343 kb on - strand, within AO356_20205 at 4518.349 kb on - strand, within AO356_20205 at 4518.349 kb on - strand, within AO356_20205 at 4518.349 kb on - strand, within AO356_20205 at 4518.349 kb on - strand, within AO356_20205 at 4518.558 kb on + strand, within AO356_20205 at 4518.559 kb on - strand, within AO356_20205 at 4518.559 kb on - strand, within AO356_20205 at 4518.559 kb on - strand, within AO356_20205 at 4518.559 kb on - strand, within AO356_20205 at 4518.559 kb on - strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.561 kb on + strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.562 kb on - strand, within AO356_20205 at 4518.667 kb on - strand, within AO356_20205 at 4518.711 kb on + strand, within AO356_20205 at 4518.711 kb on + strand, within AO356_20205 at 4518.711 kb on + strand, within AO356_20205 at 4518.711 kb on + strand, within AO356_20205 at 4518.712 kb on - strand, within AO356_20205 at 4518.712 kb on - strand, within AO356_20205 at 4518.712 kb on - strand, within AO356_20205 at 4518.712 kb on - strand, within AO356_20205 at 4518.712 kb on - strand, within AO356_20205 at 4518.716 kb on - strand, within AO356_20205 at 4518.760 kb on - strand at 4518.893 kb on + strand at 4518.899 kb on + strand at 4518.900 kb on - strand at 4518.900 kb on - strand at 4518.900 kb on - strand at 4518.900 kb on - strand at 4518.926 kb on - strand at 4518.926 kb on - strand at 4518.931 kb on + strand at 4518.975 kb on + strand at 4518.975 kb on + strand at 4518.975 kb on + strand at 4518.976 kb on - strand at 4518.985 kb on + strand at 4518.985 kb on + strand at 4518.986 kb on - strand at 4519.035 kb on + strand at 4519.114 kb on + strand at 4519.118 kb on + strand at 4519.119 kb on - strand at 4519.119 kb on - strand at 4519.176 kb on + strand at 4519.177 kb on - strand at 4519.182 kb on + strand at 4519.241 kb on + strand at 4519.374 kb on + strand, within AO356_20210 at 4519.374 kb on + strand, within AO356_20210 at 4519.375 kb on - strand, within AO356_20210 at 4519.375 kb on - strand, within AO356_20210 at 4519.375 kb on - strand, within AO356_20210 at 4519.375 kb on - strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.404 kb on + strand, within AO356_20210 at 4519.405 kb on - strand, within AO356_20210 at 4519.405 kb on - strand, within AO356_20210 at 4519.425 kb on + strand, within AO356_20210 at 4519.426 kb on - strand, within AO356_20210 at 4519.497 kb on + strand, within AO356_20210 at 4519.498 kb on - strand, within AO356_20210 at 4519.690 kb on - strand, within AO356_20210 at 4519.690 kb on - strand, within AO356_20210 at 4519.690 kb on - strand, within AO356_20210 at 4519.699 kb on - strand, within AO356_20210 at 4519.740 kb on + strand, within AO356_20210 at 4519.740 kb on + strand, within AO356_20210 at 4519.740 kb on + strand, within AO356_20210
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 4,517,643 + +1.4 4,517,643 + -0.4 4,517,643 + -0.2 4,517,643 + +0.7 4,517,643 + +1.0 4,517,644 - -0.3 4,517,646 + +0.2 4,517,647 - -0.4 4,517,647 - +0.1 4,517,647 - -1.9 4,517,749 + AO356_20200 0.20 +0.3 4,517,750 - AO356_20200 0.20 -0.0 4,517,750 - AO356_20200 0.20 +0.2 4,517,758 + AO356_20200 0.23 +0.7 4,517,758 + AO356_20200 0.23 +0.2 4,517,758 + AO356_20200 0.23 +1.4 4,517,758 + AO356_20200 0.23 +0.3 4,517,758 + AO356_20200 0.23 +1.3 4,517,758 + AO356_20200 0.23 +0.4 4,517,759 - AO356_20200 0.23 +0.3 4,517,759 - AO356_20200 0.23 +0.8 4,517,759 - AO356_20200 0.23 -0.1 4,517,759 - AO356_20200 0.23 +0.7 4,517,759 - AO356_20200 0.23 -1.4 4,517,759 - AO356_20200 0.23 +0.3 4,517,759 - AO356_20200 0.23 -0.8 4,517,934 - AO356_20200 0.72 -0.3 4,518,024 + -0.0 4,518,024 + +1.0 4,518,024 + +0.4 4,518,024 + +0.2 4,518,025 - +0.1 4,518,031 + +0.6 4,518,031 + +1.0 4,518,031 + -0.2 4,518,031 + +0.8 4,518,031 + +1.1 4,518,031 + +0.7 4,518,032 - +0.2 4,518,032 - +0.0 4,518,032 - +1.3 4,518,044 + +0.9 4,518,044 + +0.9 4,518,044 + +1.4 4,518,044 + +0.8 4,518,044 + -1.3 4,518,044 + +1.0 4,518,045 - +0.6 4,518,045 - -0.1 4,518,045 - -1.6 4,518,045 - -0.6 4,518,045 - -0.1 4,518,052 + -0.1 4,518,052 + -1.1 4,518,053 - +0.4 4,518,053 - +1.0 4,518,211 - AO356_20205 0.21 +1.0 4,518,342 + AO356_20205 0.37 -0.3 4,518,343 - AO356_20205 0.37 -1.1 4,518,349 - AO356_20205 0.38 -0.9 4,518,349 - AO356_20205 0.38 +0.1 4,518,349 - AO356_20205 0.38 +0.5 4,518,349 - AO356_20205 0.38 +0.2 4,518,558 + AO356_20205 0.65 -2.2 4,518,559 - AO356_20205 0.65 +1.0 4,518,559 - AO356_20205 0.65 -0.7 4,518,559 - AO356_20205 0.65 -0.3 4,518,559 - AO356_20205 0.65 -0.5 4,518,559 - AO356_20205 0.65 +0.5 4,518,561 + AO356_20205 0.65 +1.0 4,518,561 + AO356_20205 0.65 +0.2 4,518,561 + AO356_20205 0.65 +0.5 4,518,561 + AO356_20205 0.65 +0.0 4,518,561 + AO356_20205 0.65 -0.5 4,518,561 + AO356_20205 0.65 +0.6 4,518,561 + AO356_20205 0.65 -1.2 4,518,561 + AO356_20205 0.65 -0.6 4,518,561 + AO356_20205 0.65 +0.1 4,518,561 + AO356_20205 0.65 -0.3 4,518,562 - AO356_20205 0.65 -0.4 4,518,562 - AO356_20205 0.65 -0.5 4,518,562 - AO356_20205 0.65 -0.8 4,518,562 - AO356_20205 0.65 +0.0 4,518,562 - AO356_20205 0.65 +0.1 4,518,562 - AO356_20205 0.65 +0.9 4,518,667 - AO356_20205 0.78 +0.5 4,518,711 + AO356_20205 0.84 -0.2 4,518,711 + AO356_20205 0.84 +0.6 4,518,711 + AO356_20205 0.84 -2.3 4,518,711 + AO356_20205 0.84 -0.5 4,518,712 - AO356_20205 0.84 +0.6 4,518,712 - AO356_20205 0.84 +0.1 4,518,712 - AO356_20205 0.84 +0.7 4,518,712 - AO356_20205 0.84 -0.9 4,518,712 - AO356_20205 0.84 -1.0 4,518,716 - AO356_20205 0.84 +0.6 4,518,760 - -1.2 4,518,893 + -0.5 4,518,899 + +0.5 4,518,900 - +0.8 4,518,900 - -0.7 4,518,900 - +0.6 4,518,900 - -0.3 4,518,926 - -0.7 4,518,926 - +0.6 4,518,931 + +1.5 4,518,975 + +0.7 4,518,975 + +1.5 4,518,975 + +1.0 4,518,976 - +0.5 4,518,985 + +0.1 4,518,985 + +0.6 4,518,986 - -1.0 4,519,035 + +0.8 4,519,114 + +0.2 4,519,118 + -0.0 4,519,119 - +0.3 4,519,119 - +1.2 4,519,176 + -0.2 4,519,177 - +0.3 4,519,182 + -0.2 4,519,241 + -1.0 4,519,374 + AO356_20210 0.23 +0.8 4,519,374 + AO356_20210 0.23 -0.5 4,519,375 - AO356_20210 0.24 +0.3 4,519,375 - AO356_20210 0.24 -0.5 4,519,375 - AO356_20210 0.24 +0.3 4,519,375 - AO356_20210 0.24 +1.0 4,519,404 + AO356_20210 0.28 +0.4 4,519,404 + AO356_20210 0.28 +0.3 4,519,404 + AO356_20210 0.28 +0.9 4,519,404 + AO356_20210 0.28 -0.2 4,519,404 + AO356_20210 0.28 +0.5 4,519,404 + AO356_20210 0.28 -0.5 4,519,405 - AO356_20210 0.28 +0.7 4,519,405 - AO356_20210 0.28 +0.2 4,519,425 + AO356_20210 0.31 +0.2 4,519,426 - AO356_20210 0.32 +0.9 4,519,497 + AO356_20210 0.43 +1.8 4,519,498 - AO356_20210 0.43 +0.4 4,519,690 - AO356_20210 0.73 +0.4 4,519,690 - AO356_20210 0.73 +0.4 4,519,690 - AO356_20210 0.73 -1.0 4,519,699 - AO356_20210 0.74 +0.4 4,519,740 + AO356_20210 0.81 +0.4 4,519,740 + AO356_20210 0.81 +0.9 4,519,740 + AO356_20210 0.81 -0.8
Or see this region's nucleotide sequence