Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19615

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19610 and AO356_19615 are separated by 154 nucleotidesAO356_19615 and AO356_19620 are separated by 136 nucleotides AO356_19610: AO356_19610 - 2-hydroxy-3-oxopropionate reductase, at 4,397,370 to 4,398,260 _19610 AO356_19615: AO356_19615 - hydroxypyruvate isomerase, at 4,398,415 to 4,399,197 _19615 AO356_19620: AO356_19620 - glyoxylate carboligase, at 4,399,334 to 4,401,109 _19620 Position (kb) 4398 4399 4400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4397.608 kb on - strand, within AO356_19610at 4397.914 kb on + strand, within AO356_19610at 4397.915 kb on - strand, within AO356_19610at 4397.915 kb on - strand, within AO356_19610at 4398.254 kb on + strandat 4398.254 kb on + strandat 4398.255 kb on - strandat 4398.282 kb on + strandat 4398.476 kb on + strandat 4398.476 kb on + strandat 4398.477 kb on - strandat 4398.477 kb on - strandat 4398.477 kb on - strandat 4398.537 kb on - strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.659 kb on + strand, within AO356_19615at 4398.660 kb on - strand, within AO356_19615at 4398.660 kb on - strand, within AO356_19615at 4398.660 kb on - strand, within AO356_19615at 4398.660 kb on - strand, within AO356_19615at 4398.668 kb on + strand, within AO356_19615at 4398.669 kb on - strand, within AO356_19615at 4398.737 kb on + strand, within AO356_19615at 4398.738 kb on - strand, within AO356_19615at 4398.759 kb on + strand, within AO356_19615at 4399.079 kb on + strand, within AO356_19615at 4399.079 kb on + strand, within AO356_19615at 4399.079 kb on + strand, within AO356_19615at 4399.079 kb on + strand, within AO356_19615at 4399.079 kb on + strand, within AO356_19615at 4399.080 kb on - strand, within AO356_19615at 4399.080 kb on - strand, within AO356_19615at 4399.097 kb on + strand, within AO356_19615at 4399.098 kb on - strand, within AO356_19615at 4399.098 kb on - strand, within AO356_19615at 4399.287 kb on - strandat 4399.287 kb on - strandat 4399.287 kb on - strandat 4399.590 kb on + strand, within AO356_19620at 4399.641 kb on + strand, within AO356_19620at 4399.641 kb on + strand, within AO356_19620at 4399.641 kb on + strand, within AO356_19620at 4399.641 kb on + strand, within AO356_19620at 4399.642 kb on - strand, within AO356_19620at 4399.686 kb on + strand, within AO356_19620at 4399.687 kb on - strand, within AO356_19620at 4399.687 kb on - strand, within AO356_19620at 4399.713 kb on + strand, within AO356_19620at 4399.713 kb on + strand, within AO356_19620at 4399.713 kb on + strand, within AO356_19620at 4399.714 kb on - strand, within AO356_19620at 4399.714 kb on - strand, within AO356_19620at 4399.714 kb on - strand, within AO356_19620at 4399.890 kb on + strand, within AO356_19620at 4399.891 kb on - strand, within AO356_19620at 4399.944 kb on + strand, within AO356_19620at 4399.944 kb on + strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.945 kb on - strand, within AO356_19620at 4399.983 kb on + strand, within AO356_19620at 4399.983 kb on + strand, within AO356_19620at 4399.984 kb on - strand, within AO356_19620

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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4,397,608 - AO356_19610 0.27 -2.3
4,397,914 + AO356_19610 0.61 -1.9
4,397,915 - AO356_19610 0.61 -2.0
4,397,915 - AO356_19610 0.61 -3.1
4,398,254 + -1.6
4,398,254 + -0.8
4,398,255 - -1.8
4,398,282 + -1.6
4,398,476 + -2.5
4,398,476 + -3.0
4,398,477 - -3.8
4,398,477 - -3.6
4,398,477 - -2.6
4,398,537 - AO356_19615 0.16 -4.0
4,398,659 + AO356_19615 0.31 -3.0
4,398,659 + AO356_19615 0.31 -2.4
4,398,659 + AO356_19615 0.31 -4.0
4,398,659 + AO356_19615 0.31 -3.6
4,398,659 + AO356_19615 0.31 -1.9
4,398,659 + AO356_19615 0.31 -1.9
4,398,660 - AO356_19615 0.31 -1.4
4,398,660 - AO356_19615 0.31 -2.9
4,398,660 - AO356_19615 0.31 -3.0
4,398,660 - AO356_19615 0.31 -2.0
4,398,668 + AO356_19615 0.32 -0.8
4,398,669 - AO356_19615 0.32 -2.3
4,398,737 + AO356_19615 0.41 -2.6
4,398,738 - AO356_19615 0.41 -3.0
4,398,759 + AO356_19615 0.44 -2.6
4,399,079 + AO356_19615 0.85 -1.8
4,399,079 + AO356_19615 0.85 -2.2
4,399,079 + AO356_19615 0.85 -3.3
4,399,079 + AO356_19615 0.85 -3.1
4,399,079 + AO356_19615 0.85 -2.3
4,399,080 - AO356_19615 0.85 -3.6
4,399,080 - AO356_19615 0.85 -3.0
4,399,097 + AO356_19615 0.87 -1.3
4,399,098 - AO356_19615 0.87 -3.2
4,399,098 - AO356_19615 0.87 -2.6
4,399,287 - +0.2
4,399,287 - -0.5
4,399,287 - +0.4
4,399,590 + AO356_19620 0.14 -2.5
4,399,641 + AO356_19620 0.17 +0.8
4,399,641 + AO356_19620 0.17 -0.9
4,399,641 + AO356_19620 0.17 -0.8
4,399,641 + AO356_19620 0.17 +0.2
4,399,642 - AO356_19620 0.17 -1.8
4,399,686 + AO356_19620 0.20 -3.5
4,399,687 - AO356_19620 0.20 -1.9
4,399,687 - AO356_19620 0.20 -4.2
4,399,713 + AO356_19620 0.21 -2.2
4,399,713 + AO356_19620 0.21 -1.6
4,399,713 + AO356_19620 0.21 -2.4
4,399,714 - AO356_19620 0.21 -2.4
4,399,714 - AO356_19620 0.21 -0.8
4,399,714 - AO356_19620 0.21 -1.9
4,399,890 + AO356_19620 0.31 -2.3
4,399,891 - AO356_19620 0.31 -1.6
4,399,944 + AO356_19620 0.34 -2.1
4,399,944 + AO356_19620 0.34 -2.0
4,399,945 - AO356_19620 0.34 -1.3
4,399,945 - AO356_19620 0.34 -1.4
4,399,945 - AO356_19620 0.34 -1.2
4,399,945 - AO356_19620 0.34 -1.7
4,399,945 - AO356_19620 0.34 -1.6
4,399,945 - AO356_19620 0.34 -1.8
4,399,945 - AO356_19620 0.34 -1.5
4,399,945 - AO356_19620 0.34 -2.0
4,399,983 + AO356_19620 0.37 -1.5
4,399,983 + AO356_19620 0.37 -0.7
4,399,984 - AO356_19620 0.37 -1.8

Or see this region's nucleotide sequence