Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17350

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17335 and AO356_17340 overlap by 4 nucleotidesAO356_17340 and AO356_17345 are separated by 3 nucleotidesAO356_17345 and AO356_17350 are separated by 252 nucleotidesAO356_17350 and AO356_17355 are separated by 126 nucleotidesAO356_17355 and AO356_17360 are separated by 88 nucleotides AO356_17335: AO356_17335 - molybdenum cofactor biosynthesis protein MoaC, at 3,908,667 to 3,909,140 _17335 AO356_17340: AO356_17340 - molybdenum cofactor biosynthesis protein MoaD, at 3,909,137 to 3,909,379 _17340 AO356_17345: AO356_17345 - molybdenum cofactor biosynthesis protein MoaE, at 3,909,383 to 3,909,835 _17345 AO356_17350: AO356_17350 - ABC transporter substrate-binding protein, at 3,910,088 to 3,910,864 _17350 AO356_17355: AO356_17355 - hypothetical protein, at 3,910,991 to 3,911,617 _17355 AO356_17360: AO356_17360 - FAD-dependent oxidoreductase, at 3,911,706 to 3,912,833 _17360 Position (kb) 3910 3911Strain fitness (log2 ratio) -2 -1 0 1 2at 3909.145 kb on + strandat 3909.725 kb on + strand, within AO356_17345at 3909.726 kb on - strand, within AO356_17345at 3909.833 kb on + strandat 3909.833 kb on + strandat 3909.834 kb on - strandat 3909.845 kb on + strandat 3909.845 kb on + strandat 3909.898 kb on + strandat 3909.898 kb on + strandat 3909.898 kb on + strandat 3909.898 kb on + strandat 3909.899 kb on - strandat 3909.899 kb on - strandat 3909.899 kb on - strandat 3909.906 kb on + strandat 3909.906 kb on + strandat 3909.906 kb on + strandat 3909.907 kb on - strandat 3909.907 kb on - strandat 3909.907 kb on - strandat 3909.907 kb on - strandat 3909.907 kb on - strandat 3909.998 kb on + strandat 3909.999 kb on - strandat 3910.022 kb on - strandat 3910.023 kb on + strandat 3910.241 kb on + strand, within AO356_17350at 3910.242 kb on - strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.409 kb on + strand, within AO356_17350at 3910.410 kb on - strand, within AO356_17350at 3910.410 kb on - strand, within AO356_17350at 3910.410 kb on - strand, within AO356_17350at 3910.412 kb on + strand, within AO356_17350at 3910.412 kb on + strand, within AO356_17350at 3910.412 kb on + strand, within AO356_17350at 3910.413 kb on - strand, within AO356_17350at 3910.413 kb on - strand, within AO356_17350at 3910.413 kb on - strand, within AO356_17350at 3910.413 kb on - strand, within AO356_17350at 3910.466 kb on + strand, within AO356_17350at 3910.467 kb on - strand, within AO356_17350at 3910.589 kb on + strand, within AO356_17350at 3910.590 kb on - strand, within AO356_17350at 3910.590 kb on - strand, within AO356_17350at 3910.590 kb on - strand, within AO356_17350at 3910.590 kb on - strand, within AO356_17350at 3910.715 kb on + strand, within AO356_17350at 3910.715 kb on + strand, within AO356_17350at 3910.715 kb on + strand, within AO356_17350at 3910.715 kb on + strand, within AO356_17350at 3910.716 kb on - strand, within AO356_17350at 3910.814 kb on + strandat 3910.814 kb on + strandat 3910.814 kb on + strandat 3910.815 kb on - strandat 3910.815 kb on - strandat 3910.835 kb on + strandat 3910.835 kb on + strandat 3910.836 kb on - strandat 3910.836 kb on - strandat 3910.849 kb on + strandat 3910.850 kb on - strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.853 kb on + strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.854 kb on - strandat 3910.866 kb on + strandat 3910.866 kb on + strandat 3910.866 kb on + strandat 3910.867 kb on - strandat 3910.867 kb on - strandat 3910.913 kb on - strandat 3910.919 kb on + strandat 3910.919 kb on + strandat 3910.920 kb on - strandat 3910.920 kb on - strandat 3910.983 kb on + strandat 3910.983 kb on + strandat 3910.983 kb on + strandat 3910.984 kb on - strandat 3911.019 kb on + strandat 3911.019 kb on + strandat 3911.019 kb on + strandat 3911.020 kb on - strandat 3911.020 kb on - strandat 3911.020 kb on - strandat 3911.020 kb on - strandat 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.058 kb on + strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.059 kb on - strand, within AO356_17355at 3911.297 kb on - strand, within AO356_17355at 3911.410 kb on + strand, within AO356_17355at 3911.410 kb on + strand, within AO356_17355at 3911.410 kb on + strand, within AO356_17355at 3911.410 kb on + strand, within AO356_17355at 3911.411 kb on - strand, within AO356_17355at 3911.411 kb on - strand, within AO356_17355at 3911.482 kb on + strand, within AO356_17355at 3911.483 kb on - strand, within AO356_17355at 3911.493 kb on + strand, within AO356_17355at 3911.493 kb on + strand, within AO356_17355at 3911.493 kb on + strand, within AO356_17355at 3911.493 kb on + strand, within AO356_17355at 3911.493 kb on + strand, within AO356_17355at 3911.494 kb on - strand, within AO356_17355at 3911.494 kb on - strand, within AO356_17355at 3911.494 kb on - strand, within AO356_17355at 3911.544 kb on + strand, within AO356_17355at 3911.544 kb on + strand, within AO356_17355at 3911.785 kb on - strandat 3911.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,909,145 + -1.8
3,909,725 + AO356_17345 0.75 -0.8
3,909,726 - AO356_17345 0.76 -1.8
3,909,833 + +1.0
3,909,833 + -0.7
3,909,834 - -0.6
3,909,845 + -0.6
3,909,845 + -0.2
3,909,898 + -0.1
3,909,898 + -1.1
3,909,898 + +0.8
3,909,898 + -1.7
3,909,899 - -0.1
3,909,899 - -1.0
3,909,899 - -0.1
3,909,906 + +0.2
3,909,906 + -0.1
3,909,906 + -0.0
3,909,907 - -1.2
3,909,907 - +0.0
3,909,907 - +0.7
3,909,907 - +0.7
3,909,907 - +0.4
3,909,998 + -0.4
3,909,999 - +0.6
3,910,022 - -0.6
3,910,023 + +0.2
3,910,241 + AO356_17350 0.20 +0.2
3,910,242 - AO356_17350 0.20 +0.2
3,910,409 + AO356_17350 0.41 +0.0
3,910,409 + AO356_17350 0.41 +0.1
3,910,409 + AO356_17350 0.41 -0.4
3,910,409 + AO356_17350 0.41 +0.3
3,910,409 + AO356_17350 0.41 -0.2
3,910,409 + AO356_17350 0.41 +1.7
3,910,409 + AO356_17350 0.41 +0.1
3,910,409 + AO356_17350 0.41 -0.1
3,910,409 + AO356_17350 0.41 +1.1
3,910,410 - AO356_17350 0.41 -0.2
3,910,410 - AO356_17350 0.41 +0.4
3,910,410 - AO356_17350 0.41 -0.0
3,910,412 + AO356_17350 0.42 +0.4
3,910,412 + AO356_17350 0.42 +0.3
3,910,412 + AO356_17350 0.42 -0.1
3,910,413 - AO356_17350 0.42 +0.9
3,910,413 - AO356_17350 0.42 +0.3
3,910,413 - AO356_17350 0.42 +0.2
3,910,413 - AO356_17350 0.42 -0.4
3,910,466 + AO356_17350 0.49 +0.3
3,910,467 - AO356_17350 0.49 +0.4
3,910,589 + AO356_17350 0.64 +1.0
3,910,590 - AO356_17350 0.65 +0.3
3,910,590 - AO356_17350 0.65 -0.0
3,910,590 - AO356_17350 0.65 -1.4
3,910,590 - AO356_17350 0.65 +0.3
3,910,715 + AO356_17350 0.81 -0.3
3,910,715 + AO356_17350 0.81 +0.4
3,910,715 + AO356_17350 0.81 +0.8
3,910,715 + AO356_17350 0.81 +0.1
3,910,716 - AO356_17350 0.81 +0.2
3,910,814 + +0.6
3,910,814 + +0.1
3,910,814 + -0.5
3,910,815 - -0.8
3,910,815 - -0.0
3,910,835 + -0.6
3,910,835 + -2.2
3,910,836 - +0.4
3,910,836 - -0.3
3,910,849 + +0.2
3,910,850 - -0.2
3,910,853 + +0.8
3,910,853 + -0.3
3,910,853 + -1.9
3,910,853 + -0.6
3,910,853 + -0.3
3,910,853 + +0.8
3,910,853 + +0.4
3,910,853 + +0.2
3,910,853 + -0.1
3,910,853 + -0.4
3,910,853 + -0.0
3,910,853 + -1.2
3,910,853 + -1.4
3,910,853 + -1.7
3,910,853 + -0.7
3,910,854 - +0.0
3,910,854 - -0.3
3,910,854 - +0.4
3,910,854 - -0.7
3,910,854 - +0.7
3,910,854 - -0.2
3,910,854 - +0.2
3,910,854 - -1.8
3,910,854 - +0.6
3,910,854 - +0.4
3,910,854 - +0.9
3,910,854 - +0.4
3,910,854 - -0.9
3,910,854 - -0.7
3,910,854 - +0.2
3,910,854 - +1.1
3,910,866 + -0.6
3,910,866 + +1.6
3,910,866 + +0.5
3,910,867 - +0.7
3,910,867 - -0.1
3,910,913 - +0.8
3,910,919 + -0.0
3,910,919 + +0.3
3,910,920 - -0.0
3,910,920 - +0.3
3,910,983 + +0.4
3,910,983 + +0.8
3,910,983 + +0.1
3,910,984 - +0.5
3,911,019 + -0.0
3,911,019 + +0.2
3,911,019 + -0.0
3,911,020 - +0.2
3,911,020 - -0.4
3,911,020 - -0.1
3,911,020 - -0.3
3,911,058 + AO356_17355 0.11 -1.0
3,911,058 + AO356_17355 0.11 +0.9
3,911,058 + AO356_17355 0.11 -0.3
3,911,058 + AO356_17355 0.11 -0.3
3,911,058 + AO356_17355 0.11 -0.9
3,911,058 + AO356_17355 0.11 -0.4
3,911,058 + AO356_17355 0.11 +0.3
3,911,058 + AO356_17355 0.11 +0.2
3,911,058 + AO356_17355 0.11 +0.6
3,911,058 + AO356_17355 0.11 -0.6
3,911,059 - AO356_17355 0.11 +0.6
3,911,059 - AO356_17355 0.11 +0.0
3,911,059 - AO356_17355 0.11 -0.0
3,911,059 - AO356_17355 0.11 -0.2
3,911,059 - AO356_17355 0.11 +0.9
3,911,059 - AO356_17355 0.11 -0.0
3,911,059 - AO356_17355 0.11 +1.8
3,911,059 - AO356_17355 0.11 -0.8
3,911,059 - AO356_17355 0.11 -0.2
3,911,059 - AO356_17355 0.11 +1.3
3,911,059 - AO356_17355 0.11 +0.6
3,911,297 - AO356_17355 0.49 -0.5
3,911,410 + AO356_17355 0.67 +0.3
3,911,410 + AO356_17355 0.67 -0.1
3,911,410 + AO356_17355 0.67 -0.9
3,911,410 + AO356_17355 0.67 -0.0
3,911,411 - AO356_17355 0.67 +0.3
3,911,411 - AO356_17355 0.67 +0.3
3,911,482 + AO356_17355 0.78 +0.7
3,911,483 - AO356_17355 0.78 +0.4
3,911,493 + AO356_17355 0.80 -0.4
3,911,493 + AO356_17355 0.80 +1.4
3,911,493 + AO356_17355 0.80 +0.4
3,911,493 + AO356_17355 0.80 +1.2
3,911,493 + AO356_17355 0.80 +0.8
3,911,494 - AO356_17355 0.80 +0.1
3,911,494 - AO356_17355 0.80 -0.7
3,911,494 - AO356_17355 0.80 -1.2
3,911,544 + AO356_17355 0.88 +0.2
3,911,544 + AO356_17355 0.88 -0.6
3,911,785 - +0.3
3,911,785 - +0.2

Or see this region's nucleotide sequence