Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16485

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16475 and AO356_16480 are separated by 1 nucleotidesAO356_16480 and AO356_16485 are separated by 4 nucleotidesAO356_16485 and AO356_16490 are separated by 172 nucleotides AO356_16475: AO356_16475 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 3,722,761 to 3,723,612 _16475 AO356_16480: AO356_16480 - outer membrane lipoprotein LolB, at 3,723,614 to 3,724,231 _16480 AO356_16485: AO356_16485 - hypothetical protein, at 3,724,236 to 3,725,960 _16485 AO356_16490: AO356_16490 - glutamyl-tRNA reductase, at 3,726,133 to 3,727,422 _16490 Position (kb) 3724 3725 3726Strain fitness (log2 ratio) -2 -1 0 1at 3724.232 kb on - strandat 3724.283 kb on + strandat 3724.284 kb on - strandat 3724.284 kb on - strandat 3724.284 kb on - strandat 3724.682 kb on - strand, within AO356_16485at 3724.682 kb on - strand, within AO356_16485at 3724.729 kb on - strand, within AO356_16485at 3724.729 kb on - strand, within AO356_16485at 3724.787 kb on - strand, within AO356_16485at 3724.802 kb on - strand, within AO356_16485at 3724.802 kb on - strand, within AO356_16485at 3724.825 kb on - strand, within AO356_16485at 3724.825 kb on - strand, within AO356_16485at 3724.904 kb on - strand, within AO356_16485at 3724.931 kb on - strand, within AO356_16485at 3725.036 kb on - strand, within AO356_16485at 3725.114 kb on - strand, within AO356_16485at 3725.186 kb on - strand, within AO356_16485at 3725.186 kb on - strand, within AO356_16485at 3725.541 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.543 kb on - strand, within AO356_16485at 3725.675 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.741 kb on - strand, within AO356_16485at 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.955 kb on - strandat 3725.961 kb on - strandat 3725.961 kb on - strandat 3725.961 kb on - strandat 3725.961 kb on - strandat 3725.961 kb on - strandat 3725.961 kb on - strandat 3725.963 kb on - strandat 3725.963 kb on - strandat 3725.963 kb on - strandat 3725.963 kb on - strandat 3726.021 kb on + strandat 3726.021 kb on + strandat 3726.038 kb on + strandat 3726.039 kb on - strandat 3726.058 kb on + strandat 3726.059 kb on - strandat 3726.092 kb on + strandat 3726.092 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,724,232 - -0.4
3,724,283 + -1.2
3,724,284 - -0.2
3,724,284 - +0.8
3,724,284 - -0.3
3,724,682 - AO356_16485 0.26 -1.0
3,724,682 - AO356_16485 0.26 -1.0
3,724,729 - AO356_16485 0.29 -1.4
3,724,729 - AO356_16485 0.29 -0.2
3,724,787 - AO356_16485 0.32 -1.4
3,724,802 - AO356_16485 0.33 -1.2
3,724,802 - AO356_16485 0.33 +1.3
3,724,825 - AO356_16485 0.34 -1.6
3,724,825 - AO356_16485 0.34 +1.2
3,724,904 - AO356_16485 0.39 -0.8
3,724,931 - AO356_16485 0.40 -2.5
3,725,036 - AO356_16485 0.46 -0.8
3,725,114 - AO356_16485 0.51 -0.2
3,725,186 - AO356_16485 0.55 -1.1
3,725,186 - AO356_16485 0.55 +0.8
3,725,541 - AO356_16485 0.76 -0.5
3,725,543 - AO356_16485 0.76 -1.1
3,725,543 - AO356_16485 0.76 -2.0
3,725,543 - AO356_16485 0.76 -0.7
3,725,543 - AO356_16485 0.76 +0.6
3,725,543 - AO356_16485 0.76 -1.0
3,725,543 - AO356_16485 0.76 -0.6
3,725,543 - AO356_16485 0.76 +0.1
3,725,543 - AO356_16485 0.76 -0.8
3,725,543 - AO356_16485 0.76 -1.5
3,725,675 - AO356_16485 0.83 -1.1
3,725,741 - AO356_16485 0.87 -2.5
3,725,741 - AO356_16485 0.87 -2.2
3,725,741 - AO356_16485 0.87 -0.6
3,725,741 - AO356_16485 0.87 +0.4
3,725,741 - AO356_16485 0.87 +0.1
3,725,741 - AO356_16485 0.87 +0.5
3,725,741 - AO356_16485 0.87 +0.4
3,725,741 - AO356_16485 0.87 +0.8
3,725,955 - -0.9
3,725,955 - -0.7
3,725,955 - +0.2
3,725,955 - +0.6
3,725,955 - -0.4
3,725,955 - -0.1
3,725,955 - +0.0
3,725,955 - -0.6
3,725,955 - +1.0
3,725,955 - +0.1
3,725,961 - +0.6
3,725,961 - +0.6
3,725,961 - -0.8
3,725,961 - +0.1
3,725,961 - -1.4
3,725,961 - -0.1
3,725,963 - +0.2
3,725,963 - -0.8
3,725,963 - +0.0
3,725,963 - -0.6
3,726,021 + +0.2
3,726,021 + +1.6
3,726,038 + -0.2
3,726,039 - -0.3
3,726,058 + +0.3
3,726,059 - -0.3
3,726,092 + +0.2
3,726,092 + +0.0

Or see this region's nucleotide sequence