Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16240

Experiment: Inosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_16235 and AO356_16240 are separated by 188 nucleotidesAO356_16240 and AO356_16245 overlap by 4 nucleotidesAO356_16245 and AO356_16250 overlap by 11 nucleotides AO356_16235: AO356_16235 - mammalian cell entry protein, at 3,668,745 to 3,671,048 _16235 AO356_16240: AO356_16240 - chromosome partitioning protein ParA, at 3,671,237 to 3,674,077 _16240 AO356_16245: AO356_16245 - chromosome partitioning protein, at 3,674,074 to 3,674,775 _16245 AO356_16250: AO356_16250 - hypothetical protein, at 3,674,765 to 3,676,045 _16250 Position (kb) 3671 3672 3673 3674 3675Strain fitness (log2 ratio) -2 -1 0 1 2at 3670.349 kb on + strand, within AO356_16235at 3670.439 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.551 kb on + strand, within AO356_16235at 3670.552 kb on - strand, within AO356_16235at 3670.552 kb on - strand, within AO356_16235at 3670.552 kb on - strand, within AO356_16235at 3670.631 kb on + strand, within AO356_16235at 3670.632 kb on - strand, within AO356_16235at 3670.707 kb on + strand, within AO356_16235at 3670.707 kb on + strand, within AO356_16235at 3670.707 kb on + strand, within AO356_16235at 3670.708 kb on - strand, within AO356_16235at 3670.708 kb on - strand, within AO356_16235at 3670.797 kb on + strand, within AO356_16235at 3670.797 kb on + strand, within AO356_16235at 3670.797 kb on + strand, within AO356_16235at 3670.797 kb on + strand, within AO356_16235at 3670.797 kb on + strand, within AO356_16235at 3670.798 kb on - strand, within AO356_16235at 3670.798 kb on - strand, within AO356_16235at 3670.949 kb on + strandat 3670.949 kb on + strandat 3670.949 kb on + strandat 3670.949 kb on + strandat 3670.995 kb on - strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.046 kb on + strandat 3671.047 kb on - strandat 3671.047 kb on - strandat 3671.047 kb on - strandat 3671.047 kb on - strandat 3671.047 kb on - strandat 3671.058 kb on + strandat 3671.310 kb on + strandat 3671.310 kb on + strandat 3671.310 kb on + strandat 3671.310 kb on + strandat 3671.310 kb on + strandat 3671.311 kb on - strandat 3671.311 kb on - strandat 3671.311 kb on - strandat 3671.311 kb on - strandat 3671.334 kb on + strandat 3671.334 kb on + strandat 3671.334 kb on + strandat 3671.334 kb on + strandat 3671.334 kb on + strandat 3671.334 kb on + strandat 3671.335 kb on - strandat 3671.335 kb on - strandat 3671.493 kb on + strandat 3671.493 kb on + strandat 3671.493 kb on + strandat 3671.493 kb on + strandat 3671.493 kb on + strandat 3671.494 kb on - strandat 3671.494 kb on - strandat 3671.494 kb on - strandat 3671.494 kb on - strandat 3671.496 kb on + strandat 3671.497 kb on - strandat 3671.497 kb on - strandat 3671.497 kb on - strandat 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.550 kb on + strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.551 kb on - strand, within AO356_16240at 3671.718 kb on + strand, within AO356_16240at 3671.719 kb on - strand, within AO356_16240at 3671.719 kb on - strand, within AO356_16240at 3671.719 kb on - strand, within AO356_16240at 3671.799 kb on + strand, within AO356_16240at 3671.946 kb on + strand, within AO356_16240at 3671.947 kb on - strand, within AO356_16240at 3671.947 kb on - strand, within AO356_16240at 3672.126 kb on + strand, within AO356_16240at 3672.126 kb on + strand, within AO356_16240at 3672.126 kb on + strand, within AO356_16240at 3672.126 kb on + strand, within AO356_16240at 3672.127 kb on - strand, within AO356_16240at 3672.127 kb on - strand, within AO356_16240at 3672.509 kb on + strand, within AO356_16240at 3672.520 kb on - strand, within AO356_16240at 3672.873 kb on + strand, within AO356_16240at 3672.873 kb on + strand, within AO356_16240at 3672.874 kb on - strand, within AO356_16240at 3672.874 kb on - strand, within AO356_16240at 3672.874 kb on - strand, within AO356_16240at 3672.874 kb on - strand, within AO356_16240at 3672.874 kb on - strand, within AO356_16240at 3673.025 kb on + strand, within AO356_16240at 3673.025 kb on + strand, within AO356_16240at 3673.025 kb on + strand, within AO356_16240at 3673.025 kb on + strand, within AO356_16240at 3673.025 kb on + strand, within AO356_16240at 3673.191 kb on + strand, within AO356_16240at 3673.208 kb on - strand, within AO356_16240at 3673.237 kb on - strand, within AO356_16240at 3673.368 kb on + strand, within AO356_16240at 3673.368 kb on + strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.369 kb on - strand, within AO356_16240at 3673.388 kb on + strand, within AO356_16240at 3673.388 kb on + strand, within AO356_16240at 3673.389 kb on - strand, within AO356_16240at 3673.389 kb on - strand, within AO356_16240at 3673.422 kb on + strand, within AO356_16240at 3673.422 kb on + strand, within AO356_16240at 3673.422 kb on + strand, within AO356_16240at 3673.648 kb on - strand, within AO356_16240at 3673.648 kb on - strand, within AO356_16240at 3673.720 kb on - strand, within AO356_16240at 3673.746 kb on + strand, within AO356_16240at 3673.746 kb on + strand, within AO356_16240at 3673.746 kb on + strand, within AO356_16240at 3673.747 kb on - strand, within AO356_16240at 3673.747 kb on - strand, within AO356_16240at 3673.842 kb on + strandat 3673.842 kb on + strandat 3673.842 kb on + strandat 3673.843 kb on - strandat 3673.843 kb on - strandat 3673.843 kb on - strandat 3673.843 kb on - strandat 3673.863 kb on + strandat 3673.890 kb on + strandat 3673.891 kb on - strandat 3673.891 kb on - strandat 3674.591 kb on + strand, within AO356_16245at 3674.591 kb on + strand, within AO356_16245at 3674.591 kb on + strand, within AO356_16245at 3674.591 kb on + strand, within AO356_16245at 3674.591 kb on + strand, within AO356_16245at 3674.592 kb on - strand, within AO356_16245at 3674.592 kb on - strand, within AO356_16245at 3674.592 kb on - strand, within AO356_16245at 3674.592 kb on - strand, within AO356_16245at 3674.594 kb on + strand, within AO356_16245at 3674.594 kb on + strand, within AO356_16245at 3674.594 kb on + strand, within AO356_16245at 3674.595 kb on - strand, within AO356_16245at 3674.595 kb on - strand, within AO356_16245at 3674.595 kb on - strand, within AO356_16245at 3674.595 kb on - strand, within AO356_16245at 3674.595 kb on - strand, within AO356_16245at 3674.682 kb on - strand, within AO356_16245at 3674.711 kb on + strandat 3674.761 kb on + strandat 3674.762 kb on - strandat 3674.866 kb on - strandat 3674.928 kb on + strand, within AO356_16250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
remove
3,670,349 + AO356_16235 0.70 -0.4
3,670,439 + AO356_16235 0.74 +0.0
3,670,551 + AO356_16235 0.78 -1.2
3,670,551 + AO356_16235 0.78 -0.3
3,670,551 + AO356_16235 0.78 -1.4
3,670,551 + AO356_16235 0.78 -0.8
3,670,551 + AO356_16235 0.78 -0.5
3,670,551 + AO356_16235 0.78 -0.5
3,670,551 + AO356_16235 0.78 -0.3
3,670,551 + AO356_16235 0.78 +0.5
3,670,552 - AO356_16235 0.78 -1.1
3,670,552 - AO356_16235 0.78 -1.4
3,670,552 - AO356_16235 0.78 +0.9
3,670,631 + AO356_16235 0.82 -2.5
3,670,632 - AO356_16235 0.82 -1.8
3,670,707 + AO356_16235 0.85 -0.7
3,670,707 + AO356_16235 0.85 -1.2
3,670,707 + AO356_16235 0.85 -1.6
3,670,708 - AO356_16235 0.85 +0.3
3,670,708 - AO356_16235 0.85 -0.5
3,670,797 + AO356_16235 0.89 -1.1
3,670,797 + AO356_16235 0.89 +0.8
3,670,797 + AO356_16235 0.89 +0.8
3,670,797 + AO356_16235 0.89 -1.4
3,670,797 + AO356_16235 0.89 -0.4
3,670,798 - AO356_16235 0.89 -0.0
3,670,798 - AO356_16235 0.89 -1.3
3,670,949 + +0.3
3,670,949 + -0.1
3,670,949 + +0.3
3,670,949 + -1.6
3,670,995 - -1.3
3,671,046 + +0.2
3,671,046 + -0.3
3,671,046 + -1.4
3,671,046 + +1.0
3,671,046 + -0.2
3,671,046 + +1.0
3,671,046 + +0.4
3,671,046 + +0.7
3,671,046 + -0.4
3,671,047 - -1.1
3,671,047 - +1.4
3,671,047 - +0.1
3,671,047 - -0.9
3,671,047 - +0.5
3,671,058 + -2.1
3,671,310 + +0.5
3,671,310 + +0.9
3,671,310 + +0.3
3,671,310 + -1.2
3,671,310 + +0.2
3,671,311 - +0.6
3,671,311 - -1.1
3,671,311 - -0.2
3,671,311 - +0.1
3,671,334 + -0.2
3,671,334 + +1.2
3,671,334 + +0.8
3,671,334 + +0.2
3,671,334 + -1.5
3,671,334 + +0.0
3,671,335 - -0.5
3,671,335 - +0.4
3,671,493 + -0.0
3,671,493 + +0.0
3,671,493 + -0.4
3,671,493 + -0.2
3,671,493 + -0.5
3,671,494 - -0.2
3,671,494 - +0.2
3,671,494 - +0.4
3,671,494 - -1.6
3,671,496 + +1.1
3,671,497 - -0.0
3,671,497 - -0.2
3,671,497 - +1.3
3,671,550 + AO356_16240 0.11 +2.2
3,671,550 + AO356_16240 0.11 +0.2
3,671,550 + AO356_16240 0.11 -1.1
3,671,550 + AO356_16240 0.11 +0.3
3,671,550 + AO356_16240 0.11 -1.5
3,671,550 + AO356_16240 0.11 +1.4
3,671,550 + AO356_16240 0.11 -1.2
3,671,550 + AO356_16240 0.11 +0.2
3,671,550 + AO356_16240 0.11 -0.3
3,671,550 + AO356_16240 0.11 +0.7
3,671,551 - AO356_16240 0.11 +0.7
3,671,551 - AO356_16240 0.11 -0.9
3,671,551 - AO356_16240 0.11 +0.3
3,671,551 - AO356_16240 0.11 -0.3
3,671,551 - AO356_16240 0.11 +0.3
3,671,551 - AO356_16240 0.11 +0.6
3,671,551 - AO356_16240 0.11 -0.4
3,671,551 - AO356_16240 0.11 +0.3
3,671,551 - AO356_16240 0.11 +0.8
3,671,551 - AO356_16240 0.11 -0.6
3,671,551 - AO356_16240 0.11 -0.0
3,671,551 - AO356_16240 0.11 +1.3
3,671,551 - AO356_16240 0.11 +0.2
3,671,718 + AO356_16240 0.17 +1.0
3,671,719 - AO356_16240 0.17 -0.4
3,671,719 - AO356_16240 0.17 -0.8
3,671,719 - AO356_16240 0.17 +0.7
3,671,799 + AO356_16240 0.20 +1.1
3,671,946 + AO356_16240 0.25 -0.3
3,671,947 - AO356_16240 0.25 +0.2
3,671,947 - AO356_16240 0.25 +0.1
3,672,126 + AO356_16240 0.31 +1.2
3,672,126 + AO356_16240 0.31 -1.3
3,672,126 + AO356_16240 0.31 +0.3
3,672,126 + AO356_16240 0.31 -0.3
3,672,127 - AO356_16240 0.31 +0.1
3,672,127 - AO356_16240 0.31 +0.1
3,672,509 + AO356_16240 0.45 -0.3
3,672,520 - AO356_16240 0.45 -0.1
3,672,873 + AO356_16240 0.58 +0.0
3,672,873 + AO356_16240 0.58 -0.7
3,672,874 - AO356_16240 0.58 +0.5
3,672,874 - AO356_16240 0.58 -0.2
3,672,874 - AO356_16240 0.58 -1.9
3,672,874 - AO356_16240 0.58 +0.0
3,672,874 - AO356_16240 0.58 +0.8
3,673,025 + AO356_16240 0.63 +0.7
3,673,025 + AO356_16240 0.63 +0.5
3,673,025 + AO356_16240 0.63 +0.7
3,673,025 + AO356_16240 0.63 -0.3
3,673,025 + AO356_16240 0.63 -0.2
3,673,191 + AO356_16240 0.69 -0.1
3,673,208 - AO356_16240 0.69 -2.3
3,673,237 - AO356_16240 0.70 +0.2
3,673,368 + AO356_16240 0.75 +0.7
3,673,368 + AO356_16240 0.75 -0.7
3,673,369 - AO356_16240 0.75 -1.3
3,673,369 - AO356_16240 0.75 -1.2
3,673,369 - AO356_16240 0.75 +1.2
3,673,369 - AO356_16240 0.75 -0.3
3,673,369 - AO356_16240 0.75 -0.4
3,673,369 - AO356_16240 0.75 +1.2
3,673,388 + AO356_16240 0.76 -0.1
3,673,388 + AO356_16240 0.76 -0.8
3,673,389 - AO356_16240 0.76 -0.4
3,673,389 - AO356_16240 0.76 -0.1
3,673,422 + AO356_16240 0.77 -1.6
3,673,422 + AO356_16240 0.77 -1.6
3,673,422 + AO356_16240 0.77 -0.4
3,673,648 - AO356_16240 0.85 +0.1
3,673,648 - AO356_16240 0.85 +0.8
3,673,720 - AO356_16240 0.87 -0.2
3,673,746 + AO356_16240 0.88 +0.3
3,673,746 + AO356_16240 0.88 +0.2
3,673,746 + AO356_16240 0.88 -0.4
3,673,747 - AO356_16240 0.88 -0.4
3,673,747 - AO356_16240 0.88 +0.2
3,673,842 + +1.1
3,673,842 + +1.5
3,673,842 + +0.8
3,673,843 - +0.2
3,673,843 - +0.5
3,673,843 - +0.4
3,673,843 - +0.6
3,673,863 + +0.2
3,673,890 + +1.3
3,673,891 - +1.0
3,673,891 - -1.0
3,674,591 + AO356_16245 0.74 +0.0
3,674,591 + AO356_16245 0.74 +0.2
3,674,591 + AO356_16245 0.74 -0.4
3,674,591 + AO356_16245 0.74 +0.5
3,674,591 + AO356_16245 0.74 -0.3
3,674,592 - AO356_16245 0.74 +1.5
3,674,592 - AO356_16245 0.74 -0.0
3,674,592 - AO356_16245 0.74 -0.5
3,674,592 - AO356_16245 0.74 -0.3
3,674,594 + AO356_16245 0.74 -0.1
3,674,594 + AO356_16245 0.74 +0.2
3,674,594 + AO356_16245 0.74 +0.6
3,674,595 - AO356_16245 0.74 -0.3
3,674,595 - AO356_16245 0.74 -0.1
3,674,595 - AO356_16245 0.74 -0.3
3,674,595 - AO356_16245 0.74 +0.2
3,674,595 - AO356_16245 0.74 +0.5
3,674,682 - AO356_16245 0.87 -0.1
3,674,711 + +0.8
3,674,761 + +0.1
3,674,762 - +0.1
3,674,866 - +1.0
3,674,928 + AO356_16250 0.13 -0.0

Or see this region's nucleotide sequence