Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09385 and AO356_09390 are separated by 179 nucleotides AO356_09390 and AO356_09395 are separated by 4 nucleotides
AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614
_09385
AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312
_09390
AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404
_09395
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-1
0
1
2 at 2126.659 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2127.426 kb on + strand at 2127.427 kb on - strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.475 kb on + strand at 2127.717 kb on + strand, within AO356_09395 at 2127.877 kb on + strand, within AO356_09395 at 2127.877 kb on + strand, within AO356_09395 at 2127.878 kb on - strand, within AO356_09395 at 2127.878 kb on - strand, within AO356_09395 at 2127.923 kb on - strand, within AO356_09395 at 2128.032 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 2,126,659 - +0.0 2,126,681 - +0.7 2,126,681 - -1.0 2,126,681 - +1.4 2,126,681 - +0.7 2,127,426 + -0.8 2,127,427 - +0.8 2,127,454 + +0.8 2,127,454 + -0.0 2,127,454 + -0.1 2,127,454 + -0.3 2,127,454 + +0.4 2,127,454 + -0.9 2,127,454 + -0.1 2,127,455 - +0.4 2,127,455 - +0.0 2,127,455 - -0.1 2,127,455 - -0.2 2,127,455 - -0.5 2,127,455 - +0.0 2,127,455 - -0.4 2,127,455 - +0.6 2,127,455 - +1.2 2,127,455 - +0.2 2,127,455 - +0.2 2,127,455 - -0.3 2,127,458 + -0.5 2,127,458 + -1.5 2,127,458 + -0.4 2,127,458 + -0.0 2,127,459 - +1.0 2,127,459 - +0.3 2,127,459 - +0.4 2,127,475 + -1.0 2,127,717 + AO356_09395 0.19 -0.3 2,127,877 + AO356_09395 0.27 -0.3 2,127,877 + AO356_09395 0.27 -0.2 2,127,878 - AO356_09395 0.27 +0.5 2,127,878 - AO356_09395 0.27 +2.0 2,127,923 - AO356_09395 0.29 -1.2 2,128,032 + AO356_09395 0.34 +0.3 2,128,254 + AO356_09395 0.45 -0.4 2,128,254 + AO356_09395 0.45 +0.5 2,128,254 + AO356_09395 0.45 +0.7 2,128,254 + AO356_09395 0.45 +0.6 2,128,254 + AO356_09395 0.45 +0.3 2,128,254 + AO356_09395 0.45 +0.4 2,128,254 + AO356_09395 0.45 +0.7 2,128,254 + AO356_09395 0.45 -0.2 2,128,254 + AO356_09395 0.45 -0.3 2,128,254 + AO356_09395 0.45 +0.4 2,128,255 - AO356_09395 0.45 +1.1 2,128,255 - AO356_09395 0.45 -0.4 2,128,255 - AO356_09395 0.45 -0.3 2,128,255 - AO356_09395 0.45 +0.2 2,128,255 - AO356_09395 0.45 +0.7
Or see this region's nucleotide sequence