Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00335

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00335 and AO356_00340 are separated by 222 nucleotidesAO356_00340 and AO356_00345 are separated by 63 nucleotidesAO356_00345 and AO356_00350 are separated by 32 nucleotides AO356_00335: AO356_00335 - integrase, at 65,556 to 67,397 _00335 AO356_00340: AO356_00340 - tRNA-Gly, at 67,620 to 67,695 _00340 AO356_00345: AO356_00345 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 67,759 to 68,319 _00345 AO356_00350: AO356_00350 - excinuclease ABC subunit C, at 68,352 to 70,175 _00350 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1at 64.589 kb on + strandat 64.590 kb on - strandat 64.590 kb on - strandat 64.597 kb on - strandat 64.711 kb on + strandat 64.711 kb on + strandat 64.712 kb on - strandat 64.712 kb on - strandat 64.712 kb on - strandat 64.740 kb on + strandat 64.741 kb on - strandat 64.755 kb on + strandat 64.755 kb on + strandat 64.756 kb on - strandat 64.756 kb on - strandat 64.816 kb on - strandat 64.816 kb on - strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.830 kb on + strandat 64.831 kb on - strandat 64.831 kb on - strandat 64.831 kb on - strandat 64.831 kb on - strandat 64.836 kb on + strandat 64.837 kb on - strandat 64.837 kb on - strandat 64.837 kb on - strandat 64.843 kb on + strandat 64.844 kb on - strandat 64.844 kb on - strandat 64.949 kb on - strandat 64.989 kb on + strandat 64.989 kb on + strandat 64.989 kb on + strandat 65.008 kb on + strandat 65.009 kb on - strandat 65.023 kb on - strandat 65.048 kb on + strandat 65.048 kb on + strandat 65.048 kb on + strandat 65.049 kb on - strandat 65.049 kb on - strandat 65.137 kb on + strandat 65.150 kb on - strandat 65.243 kb on - strandat 65.266 kb on + strandat 65.384 kb on + strandat 65.405 kb on + strandat 65.433 kb on + strandat 65.434 kb on - strandat 65.478 kb on + strandat 65.479 kb on - strandat 65.503 kb on + strandat 65.503 kb on + strandat 65.504 kb on - strandat 65.568 kb on + strandat 65.569 kb on - strandat 65.569 kb on - strandat 65.596 kb on - strandat 65.613 kb on - strandat 65.615 kb on + strandat 65.615 kb on + strandat 65.615 kb on + strandat 65.616 kb on - strandat 65.616 kb on - strandat 65.644 kb on - strandat 65.660 kb on + strandat 65.661 kb on - strandat 65.721 kb on + strandat 65.721 kb on + strandat 65.722 kb on - strandat 65.722 kb on - strandat 65.890 kb on + strand, within AO356_00335at 65.890 kb on + strand, within AO356_00335at 65.890 kb on + strand, within AO356_00335at 65.891 kb on - strand, within AO356_00335at 65.891 kb on - strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.922 kb on + strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.923 kb on - strand, within AO356_00335at 65.974 kb on - strand, within AO356_00335at 65.974 kb on - strand, within AO356_00335at 66.067 kb on + strand, within AO356_00335at 66.067 kb on + strand, within AO356_00335at 66.068 kb on - strand, within AO356_00335at 66.068 kb on - strand, within AO356_00335at 66.068 kb on - strand, within AO356_00335at 66.106 kb on - strand, within AO356_00335at 66.157 kb on - strand, within AO356_00335at 66.174 kb on + strand, within AO356_00335at 66.174 kb on + strand, within AO356_00335at 66.175 kb on - strand, within AO356_00335at 66.227 kb on - strand, within AO356_00335at 66.227 kb on - strand, within AO356_00335at 66.241 kb on + strand, within AO356_00335at 66.241 kb on + strand, within AO356_00335at 66.384 kb on + strand, within AO356_00335at 66.448 kb on + strand, within AO356_00335at 66.448 kb on + strand, within AO356_00335at 66.448 kb on + strand, within AO356_00335at 66.448 kb on + strand, within AO356_00335at 66.449 kb on - strand, within AO356_00335at 66.449 kb on - strand, within AO356_00335at 66.449 kb on - strand, within AO356_00335at 66.523 kb on + strand, within AO356_00335at 66.523 kb on + strand, within AO356_00335at 66.523 kb on + strand, within AO356_00335at 66.523 kb on + strand, within AO356_00335at 66.523 kb on + strand, within AO356_00335at 66.524 kb on - strand, within AO356_00335at 66.524 kb on - strand, within AO356_00335at 66.524 kb on - strand, within AO356_00335at 66.568 kb on - strand, within AO356_00335at 66.568 kb on - strand, within AO356_00335at 66.719 kb on - strand, within AO356_00335at 66.936 kb on + strand, within AO356_00335at 66.936 kb on + strand, within AO356_00335at 66.942 kb on + strand, within AO356_00335at 66.943 kb on - strand, within AO356_00335at 66.967 kb on + strand, within AO356_00335at 66.967 kb on + strand, within AO356_00335at 66.967 kb on + strand, within AO356_00335at 66.967 kb on + strand, within AO356_00335at 66.968 kb on - strand, within AO356_00335at 66.971 kb on + strand, within AO356_00335at 66.971 kb on + strand, within AO356_00335at 66.971 kb on + strand, within AO356_00335at 66.972 kb on - strand, within AO356_00335at 66.972 kb on - strand, within AO356_00335at 67.153 kb on + strand, within AO356_00335at 67.153 kb on + strand, within AO356_00335at 67.153 kb on + strand, within AO356_00335at 67.181 kb on + strand, within AO356_00335at 67.182 kb on - strand, within AO356_00335at 67.231 kb on + strandat 67.231 kb on + strandat 67.274 kb on - strandat 67.345 kb on + strandat 67.345 kb on + strandat 67.346 kb on - strandat 67.506 kb on + strandat 67.507 kb on - strandat 67.519 kb on + strandat 67.564 kb on - strandat 67.717 kb on + strandat 67.718 kb on - strandat 68.354 kb on - strandat 68.375 kb on - strandat 68.375 kb on - strandat 68.375 kb on - strandat 68.397 kb on - strandat 68.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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64,589 + -0.1
64,590 - -0.4
64,590 - -0.5
64,597 - -2.1
64,711 + -0.3
64,711 + -0.3
64,712 - -0.4
64,712 - +0.4
64,712 - -0.7
64,740 + +1.0
64,741 - -0.8
64,755 + +0.1
64,755 + +0.5
64,756 - -0.8
64,756 - +0.1
64,816 - -0.3
64,816 - -0.7
64,830 + +0.6
64,830 + -1.0
64,830 + -0.3
64,830 + +1.6
64,830 + -0.1
64,830 + -0.1
64,830 + +0.1
64,830 + +0.4
64,831 - -0.5
64,831 - +0.4
64,831 - +1.0
64,831 - +0.2
64,836 + +0.1
64,837 - -0.4
64,837 - +0.5
64,837 - -1.0
64,843 + -0.2
64,844 - +0.2
64,844 - +0.6
64,949 - +0.2
64,989 + +0.3
64,989 + -0.5
64,989 + +0.3
65,008 + +1.0
65,009 - +0.1
65,023 - +0.8
65,048 + -0.1
65,048 + -0.4
65,048 + -0.1
65,049 - +1.3
65,049 - +0.7
65,137 + -0.5
65,150 - -0.1
65,243 - -0.3
65,266 + +0.9
65,384 + +0.4
65,405 + -0.7
65,433 + +0.9
65,434 - +0.3
65,478 + +0.1
65,479 - +0.0
65,503 + -0.3
65,503 + -0.3
65,504 - +0.2
65,568 + -0.6
65,569 - -0.0
65,569 - -0.4
65,596 - +0.3
65,613 - -0.2
65,615 + -0.6
65,615 + -0.7
65,615 + +0.6
65,616 - -1.3
65,616 - +0.7
65,644 - -0.1
65,660 + +0.2
65,661 - +0.1
65,721 + +0.7
65,721 + -0.3
65,722 - +0.2
65,722 - +0.3
65,890 + AO356_00335 0.18 +0.9
65,890 + AO356_00335 0.18 +0.2
65,890 + AO356_00335 0.18 +0.4
65,891 - AO356_00335 0.18 +0.6
65,891 - AO356_00335 0.18 +0.5
65,922 + AO356_00335 0.20 -0.4
65,922 + AO356_00335 0.20 +0.0
65,922 + AO356_00335 0.20 -0.1
65,922 + AO356_00335 0.20 -0.3
65,922 + AO356_00335 0.20 -0.1
65,922 + AO356_00335 0.20 +1.3
65,922 + AO356_00335 0.20 +0.4
65,923 - AO356_00335 0.20 +0.4
65,923 - AO356_00335 0.20 +0.6
65,923 - AO356_00335 0.20 -0.8
65,923 - AO356_00335 0.20 +0.3
65,923 - AO356_00335 0.20 -2.8
65,923 - AO356_00335 0.20 -0.2
65,923 - AO356_00335 0.20 +0.9
65,923 - AO356_00335 0.20 +0.8
65,923 - AO356_00335 0.20 +0.1
65,974 - AO356_00335 0.23 -1.5
65,974 - AO356_00335 0.23 +0.4
66,067 + AO356_00335 0.28 -1.1
66,067 + AO356_00335 0.28 -1.3
66,068 - AO356_00335 0.28 +0.5
66,068 - AO356_00335 0.28 +0.5
66,068 - AO356_00335 0.28 -1.3
66,106 - AO356_00335 0.30 +0.1
66,157 - AO356_00335 0.33 -1.2
66,174 + AO356_00335 0.34 +0.9
66,174 + AO356_00335 0.34 +0.6
66,175 - AO356_00335 0.34 -0.6
66,227 - AO356_00335 0.36 +0.6
66,227 - AO356_00335 0.36 +0.6
66,241 + AO356_00335 0.37 -0.7
66,241 + AO356_00335 0.37 +0.3
66,384 + AO356_00335 0.45 +1.2
66,448 + AO356_00335 0.48 +0.4
66,448 + AO356_00335 0.48 +0.1
66,448 + AO356_00335 0.48 +0.3
66,448 + AO356_00335 0.48 +0.5
66,449 - AO356_00335 0.48 +1.0
66,449 - AO356_00335 0.48 +0.3
66,449 - AO356_00335 0.48 +0.1
66,523 + AO356_00335 0.52 +0.5
66,523 + AO356_00335 0.52 -0.1
66,523 + AO356_00335 0.52 -0.4
66,523 + AO356_00335 0.52 -0.4
66,523 + AO356_00335 0.52 +0.0
66,524 - AO356_00335 0.53 +0.3
66,524 - AO356_00335 0.53 +0.1
66,524 - AO356_00335 0.53 -0.3
66,568 - AO356_00335 0.55 +0.1
66,568 - AO356_00335 0.55 -0.3
66,719 - AO356_00335 0.63 +0.4
66,936 + AO356_00335 0.75 +0.2
66,936 + AO356_00335 0.75 -0.3
66,942 + AO356_00335 0.75 -1.6
66,943 - AO356_00335 0.75 -0.7
66,967 + AO356_00335 0.77 -0.7
66,967 + AO356_00335 0.77 +0.4
66,967 + AO356_00335 0.77 +0.9
66,967 + AO356_00335 0.77 -0.4
66,968 - AO356_00335 0.77 +1.0
66,971 + AO356_00335 0.77 +0.4
66,971 + AO356_00335 0.77 +1.6
66,971 + AO356_00335 0.77 -0.7
66,972 - AO356_00335 0.77 +0.5
66,972 - AO356_00335 0.77 +0.8
67,153 + AO356_00335 0.87 +0.4
67,153 + AO356_00335 0.87 -0.4
67,153 + AO356_00335 0.87 -0.0
67,181 + AO356_00335 0.88 +0.5
67,182 - AO356_00335 0.88 +0.6
67,231 + -0.7
67,231 + +0.6
67,274 - -0.2
67,345 + +0.3
67,345 + -0.7
67,346 - -0.2
67,506 + +0.7
67,507 - +1.2
67,519 + -0.5
67,564 - -0.4
67,717 + -0.1
67,718 - -0.8
68,354 - +0.5
68,375 - -0.6
68,375 - +0.9
68,375 - +0.9
68,397 - +1.0
68,397 - +0.2

Or see this region's nucleotide sequence