Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4179 and Dshi_4180 overlap by 8 nucleotides Dshi_4180 and Dshi_4181 are separated by 171 nucleotides Dshi_4181 and Dshi_4182 are separated by 51 nucleotides Dshi_4182 and Dshi_4183 are separated by 112 nucleotides Dshi_4183 and Dshi_4184 are separated by 154 nucleotides
Dshi_4179: Dshi_4179 - protein of unknown function DUF1469 (RefSeq), at 28,217 to 28,627
_4179
Dshi_4180: Dshi_4180 - hypothetical protein (RefSeq), at 28,620 to 29,135
_4180
Dshi_4181: Dshi_4181 - hypothetical protein (RefSeq), at 29,307 to 29,495
_4181
Dshi_4182: Dshi_4182 - MscS Mechanosensitive ion channel (RefSeq), at 29,547 to 30,521
_4182
Dshi_4183: Dshi_4183 - hypothetical protein (RefSeq), at 30,634 to 30,933
_4183
Dshi_4184: Dshi_4184 - CsbD family protein (RefSeq), at 31,088 to 31,285
_4184
Position (kb)
29
30
31 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 28.602 kb on + strand at 28.647 kb on - strand at 29.094 kb on + strand at 29.111 kb on + strand at 29.212 kb on - strand at 29.382 kb on + strand, within Dshi_4181 at 29.452 kb on - strand, within Dshi_4181 at 29.575 kb on - strand at 29.612 kb on + strand at 29.677 kb on - strand, within Dshi_4182 at 29.774 kb on + strand, within Dshi_4182 at 30.118 kb on - strand, within Dshi_4182 at 30.226 kb on - strand, within Dshi_4182 at 30.374 kb on - strand, within Dshi_4182 at 30.608 kb on + strand at 30.659 kb on - strand at 30.803 kb on - strand, within Dshi_4183 at 30.987 kb on - strand at 31.094 kb on - strand at 31.094 kb on - strand at 31.103 kb on + strand at 31.164 kb on + strand, within Dshi_4184 at 31.427 kb on + strand at 31.446 kb on + strand at 31.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 28,602 + -0.3 28,647 - +1.4 29,094 + +1.7 29,111 + -0.2 29,212 - +0.7 29,382 + Dshi_4181 0.40 +1.1 29,452 - Dshi_4181 0.77 -1.8 29,575 - +0.7 29,612 + +0.1 29,677 - Dshi_4182 0.13 -0.6 29,774 + Dshi_4182 0.23 -1.3 30,118 - Dshi_4182 0.59 +1.3 30,226 - Dshi_4182 0.70 -0.9 30,374 - Dshi_4182 0.85 +0.4 30,608 + +0.3 30,659 - +2.2 30,803 - Dshi_4183 0.56 +1.5 30,987 - +0.7 31,094 - -1.1 31,094 - -0.6 31,103 + -0.4 31,164 + Dshi_4184 0.38 +2.7 31,427 + -0.6 31,446 + +0.5 31,502 - -0.5
Or see this region's nucleotide sequence