Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4182

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4179 and Dshi_4180 overlap by 8 nucleotidesDshi_4180 and Dshi_4181 are separated by 171 nucleotidesDshi_4181 and Dshi_4182 are separated by 51 nucleotidesDshi_4182 and Dshi_4183 are separated by 112 nucleotidesDshi_4183 and Dshi_4184 are separated by 154 nucleotides Dshi_4179: Dshi_4179 - protein of unknown function DUF1469 (RefSeq), at 28,217 to 28,627 _4179 Dshi_4180: Dshi_4180 - hypothetical protein (RefSeq), at 28,620 to 29,135 _4180 Dshi_4181: Dshi_4181 - hypothetical protein (RefSeq), at 29,307 to 29,495 _4181 Dshi_4182: Dshi_4182 - MscS Mechanosensitive ion channel (RefSeq), at 29,547 to 30,521 _4182 Dshi_4183: Dshi_4183 - hypothetical protein (RefSeq), at 30,634 to 30,933 _4183 Dshi_4184: Dshi_4184 - CsbD family protein (RefSeq), at 31,088 to 31,285 _4184 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.602 kb on + strandat 28.647 kb on - strandat 29.094 kb on + strandat 29.111 kb on + strandat 29.212 kb on - strandat 29.382 kb on + strand, within Dshi_4181at 29.452 kb on - strand, within Dshi_4181at 29.575 kb on - strandat 29.612 kb on + strandat 29.677 kb on - strand, within Dshi_4182at 29.774 kb on + strand, within Dshi_4182at 30.118 kb on - strand, within Dshi_4182at 30.226 kb on - strand, within Dshi_4182at 30.374 kb on - strand, within Dshi_4182at 30.608 kb on + strandat 30.659 kb on - strandat 30.803 kb on - strand, within Dshi_4183at 30.987 kb on - strandat 31.094 kb on - strandat 31.094 kb on - strandat 31.103 kb on + strandat 31.164 kb on + strand, within Dshi_4184at 31.427 kb on + strandat 31.446 kb on + strandat 31.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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28,602 + -0.3
28,647 - +1.4
29,094 + +1.7
29,111 + -0.2
29,212 - +0.7
29,382 + Dshi_4181 0.40 +1.1
29,452 - Dshi_4181 0.77 -1.8
29,575 - +0.7
29,612 + +0.1
29,677 - Dshi_4182 0.13 -0.6
29,774 + Dshi_4182 0.23 -1.3
30,118 - Dshi_4182 0.59 +1.3
30,226 - Dshi_4182 0.70 -0.9
30,374 - Dshi_4182 0.85 +0.4
30,608 + +0.3
30,659 - +2.2
30,803 - Dshi_4183 0.56 +1.5
30,987 - +0.7
31,094 - -1.1
31,094 - -0.6
31,103 + -0.4
31,164 + Dshi_4184 0.38 +2.7
31,427 + -0.6
31,446 + +0.5
31,502 - -0.5

Or see this region's nucleotide sequence