Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4137

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4136 and Dshi_4137 overlap by 92 nucleotidesDshi_4137 and Dshi_4138 are separated by 110 nucleotides Dshi_4136: Dshi_4136 - polysaccharide pyruvyl transferase (RefSeq), at 68,033 to 69,217 _4136 Dshi_4137: Dshi_4137 - hypothetical protein (RefSeq), at 69,126 to 70,604 _4137 Dshi_4138: Dshi_4138 - hypothetical protein (RefSeq), at 70,715 to 71,707 _4138 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1 2at 68.204 kb on + strand, within Dshi_4136at 68.225 kb on - strand, within Dshi_4136at 68.587 kb on + strand, within Dshi_4136at 68.595 kb on - strand, within Dshi_4136at 68.637 kb on + strand, within Dshi_4136at 68.787 kb on + strand, within Dshi_4136at 68.795 kb on - strand, within Dshi_4136at 68.795 kb on - strand, within Dshi_4136at 68.853 kb on + strand, within Dshi_4136at 68.951 kb on - strand, within Dshi_4136at 68.981 kb on + strand, within Dshi_4136at 69.034 kb on - strand, within Dshi_4136at 69.061 kb on - strand, within Dshi_4136at 69.061 kb on - strand, within Dshi_4136at 69.129 kb on + strandat 69.137 kb on - strandat 69.137 kb on - strandat 69.170 kb on + strandat 69.303 kb on - strand, within Dshi_4137at 69.402 kb on + strand, within Dshi_4137at 69.408 kb on - strand, within Dshi_4137at 69.427 kb on + strand, within Dshi_4137at 69.434 kb on + strand, within Dshi_4137at 69.434 kb on + strand, within Dshi_4137at 69.436 kb on + strand, within Dshi_4137at 69.490 kb on + strand, within Dshi_4137at 69.515 kb on - strand, within Dshi_4137at 69.564 kb on + strand, within Dshi_4137at 69.572 kb on + strand, within Dshi_4137at 69.631 kb on + strand, within Dshi_4137at 69.640 kb on + strand, within Dshi_4137at 69.647 kb on - strand, within Dshi_4137at 69.648 kb on - strand, within Dshi_4137at 69.653 kb on + strand, within Dshi_4137at 69.655 kb on - strand, within Dshi_4137at 69.656 kb on - strand, within Dshi_4137at 69.661 kb on - strand, within Dshi_4137at 69.666 kb on + strand, within Dshi_4137at 69.678 kb on - strand, within Dshi_4137at 69.717 kb on + strand, within Dshi_4137at 69.723 kb on - strand, within Dshi_4137at 69.734 kb on + strand, within Dshi_4137at 69.734 kb on + strand, within Dshi_4137at 69.767 kb on + strand, within Dshi_4137at 69.805 kb on - strand, within Dshi_4137at 69.842 kb on + strand, within Dshi_4137at 69.850 kb on - strand, within Dshi_4137at 69.902 kb on + strand, within Dshi_4137at 69.920 kb on - strand, within Dshi_4137at 69.923 kb on + strand, within Dshi_4137at 69.936 kb on + strand, within Dshi_4137at 69.972 kb on - strand, within Dshi_4137at 70.005 kb on - strand, within Dshi_4137at 70.006 kb on + strand, within Dshi_4137at 70.069 kb on - strand, within Dshi_4137at 70.110 kb on - strand, within Dshi_4137at 70.142 kb on + strand, within Dshi_4137at 70.204 kb on + strand, within Dshi_4137at 70.212 kb on - strand, within Dshi_4137at 70.251 kb on + strand, within Dshi_4137at 70.332 kb on + strand, within Dshi_4137at 70.370 kb on + strand, within Dshi_4137at 70.416 kb on - strand, within Dshi_4137at 70.422 kb on + strand, within Dshi_4137at 70.436 kb on - strand, within Dshi_4137at 70.438 kb on + strand, within Dshi_4137at 70.438 kb on + strand, within Dshi_4137at 70.446 kb on - strand, within Dshi_4137at 70.446 kb on - strand, within Dshi_4137at 70.451 kb on - strand, within Dshi_4137at 70.451 kb on - strand, within Dshi_4137at 70.520 kb on + strandat 70.576 kb on + strandat 70.576 kb on + strandat 70.584 kb on - strandat 70.589 kb on + strandat 70.597 kb on - strandat 70.667 kb on + strandat 70.682 kb on - strandat 70.713 kb on + strandat 70.770 kb on + strandat 70.778 kb on - strandat 70.793 kb on - strandat 70.934 kb on + strand, within Dshi_4138at 70.942 kb on - strand, within Dshi_4138at 70.993 kb on - strand, within Dshi_4138at 71.061 kb on - strand, within Dshi_4138at 71.128 kb on - strand, within Dshi_4138at 71.218 kb on - strand, within Dshi_4138at 71.223 kb on + strand, within Dshi_4138at 71.269 kb on + strand, within Dshi_4138at 71.374 kb on + strand, within Dshi_4138at 71.436 kb on - strand, within Dshi_4138at 71.589 kb on + strand, within Dshi_4138

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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68,204 + Dshi_4136 0.14 -1.0
68,225 - Dshi_4136 0.16 +0.5
68,587 + Dshi_4136 0.47 +1.1
68,595 - Dshi_4136 0.47 +1.4
68,637 + Dshi_4136 0.51 +0.1
68,787 + Dshi_4136 0.64 +0.2
68,795 - Dshi_4136 0.64 -0.7
68,795 - Dshi_4136 0.64 -0.3
68,853 + Dshi_4136 0.69 +1.4
68,951 - Dshi_4136 0.77 -0.5
68,981 + Dshi_4136 0.80 -0.3
69,034 - Dshi_4136 0.84 -0.6
69,061 - Dshi_4136 0.87 +0.8
69,061 - Dshi_4136 0.87 +0.1
69,129 + +0.7
69,137 - +0.7
69,137 - -0.5
69,170 + -0.5
69,303 - Dshi_4137 0.12 +0.9
69,402 + Dshi_4137 0.19 -0.4
69,408 - Dshi_4137 0.19 -0.6
69,427 + Dshi_4137 0.20 +0.7
69,434 + Dshi_4137 0.21 -0.7
69,434 + Dshi_4137 0.21 +1.7
69,436 + Dshi_4137 0.21 +0.8
69,490 + Dshi_4137 0.25 +0.3
69,515 - Dshi_4137 0.26 +0.3
69,564 + Dshi_4137 0.30 -0.2
69,572 + Dshi_4137 0.30 +0.1
69,631 + Dshi_4137 0.34 -0.1
69,640 + Dshi_4137 0.35 +0.7
69,647 - Dshi_4137 0.35 +0.4
69,648 - Dshi_4137 0.35 +1.3
69,653 + Dshi_4137 0.36 +0.7
69,655 - Dshi_4137 0.36 +0.1
69,656 - Dshi_4137 0.36 +2.1
69,661 - Dshi_4137 0.36 +0.7
69,666 + Dshi_4137 0.37 +0.6
69,678 - Dshi_4137 0.37 -0.1
69,717 + Dshi_4137 0.40 -0.0
69,723 - Dshi_4137 0.40 +1.4
69,734 + Dshi_4137 0.41 +0.7
69,734 + Dshi_4137 0.41 +0.2
69,767 + Dshi_4137 0.43 +1.3
69,805 - Dshi_4137 0.46 +0.2
69,842 + Dshi_4137 0.48 +0.8
69,850 - Dshi_4137 0.49 -0.5
69,902 + Dshi_4137 0.52 -0.7
69,920 - Dshi_4137 0.54 -0.1
69,923 + Dshi_4137 0.54 +0.9
69,936 + Dshi_4137 0.55 +2.3
69,972 - Dshi_4137 0.57 -0.0
70,005 - Dshi_4137 0.59 +1.0
70,006 + Dshi_4137 0.59 +0.7
70,069 - Dshi_4137 0.64 -1.2
70,110 - Dshi_4137 0.67 +1.0
70,142 + Dshi_4137 0.69 -0.2
70,204 + Dshi_4137 0.73 +1.5
70,212 - Dshi_4137 0.73 -1.5
70,251 + Dshi_4137 0.76 -1.2
70,332 + Dshi_4137 0.82 -1.6
70,370 + Dshi_4137 0.84 -0.1
70,416 - Dshi_4137 0.87 +0.0
70,422 + Dshi_4137 0.88 +0.2
70,436 - Dshi_4137 0.89 -0.9
70,438 + Dshi_4137 0.89 -0.4
70,438 + Dshi_4137 0.89 +0.2
70,446 - Dshi_4137 0.89 -1.5
70,446 - Dshi_4137 0.89 +1.7
70,451 - Dshi_4137 0.90 +1.2
70,451 - Dshi_4137 0.90 +0.3
70,520 + +0.1
70,576 + +1.3
70,576 + +0.4
70,584 - +0.5
70,589 + +0.7
70,597 - +0.0
70,667 + -1.1
70,682 - +0.2
70,713 + +0.7
70,770 + +1.0
70,778 - -1.2
70,793 - +1.7
70,934 + Dshi_4138 0.22 -0.2
70,942 - Dshi_4138 0.23 +1.2
70,993 - Dshi_4138 0.28 +1.1
71,061 - Dshi_4138 0.35 +1.2
71,128 - Dshi_4138 0.42 +0.4
71,218 - Dshi_4138 0.51 +0.2
71,223 + Dshi_4138 0.51 +0.8
71,269 + Dshi_4138 0.56 +1.3
71,374 + Dshi_4138 0.66 -0.3
71,436 - Dshi_4138 0.73 -0.5
71,589 + Dshi_4138 0.88 -0.3

Or see this region's nucleotide sequence