Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3868

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3866 and Dshi_3867 are separated by 4 nucleotidesDshi_3867 and Dshi_3868 are separated by 95 nucleotidesDshi_3868 and Dshi_3869 are separated by 62 nucleotides Dshi_3866: Dshi_3866 - glycosyl transferase group 1 (RefSeq), at 75,905 to 79,813 _3866 Dshi_3867: Dshi_3867 - hypothetical protein (RefSeq), at 79,818 to 80,708 _3867 Dshi_3868: Dshi_3868 - UDP-glucose 4-epimerase (RefSeq), at 80,804 to 81,883 _3868 Dshi_3869: Dshi_3869 - hypothetical protein (RefSeq), at 81,946 to 83,121 _3869 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2 3at 79.928 kb on + strand, within Dshi_3867at 79.936 kb on - strand, within Dshi_3867at 79.938 kb on + strand, within Dshi_3867at 79.943 kb on + strand, within Dshi_3867at 79.947 kb on + strand, within Dshi_3867at 79.974 kb on - strand, within Dshi_3867at 80.009 kb on + strand, within Dshi_3867at 80.011 kb on + strand, within Dshi_3867at 80.039 kb on - strand, within Dshi_3867at 80.047 kb on + strand, within Dshi_3867at 80.171 kb on - strand, within Dshi_3867at 80.198 kb on + strand, within Dshi_3867at 80.399 kb on - strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.466 kb on - strand, within Dshi_3867at 80.519 kb on + strand, within Dshi_3867at 80.534 kb on + strand, within Dshi_3867at 80.554 kb on + strand, within Dshi_3867at 80.603 kb on + strand, within Dshi_3867at 80.643 kb on + strandat 80.683 kb on + strandat 80.683 kb on + strandat 80.683 kb on + strandat 80.683 kb on - strandat 80.698 kb on + strandat 80.711 kb on - strandat 80.758 kb on - strandat 80.769 kb on + strandat 80.777 kb on - strandat 80.803 kb on - strandat 80.815 kb on - strandat 80.830 kb on + strandat 80.948 kb on + strand, within Dshi_3868at 81.006 kb on - strand, within Dshi_3868at 81.029 kb on - strand, within Dshi_3868at 81.086 kb on - strand, within Dshi_3868at 81.101 kb on - strand, within Dshi_3868at 81.107 kb on - strand, within Dshi_3868at 81.166 kb on + strand, within Dshi_3868at 81.201 kb on - strand, within Dshi_3868at 81.270 kb on + strand, within Dshi_3868at 81.270 kb on + strand, within Dshi_3868at 81.319 kb on + strand, within Dshi_3868at 81.326 kb on + strand, within Dshi_3868at 81.327 kb on - strand, within Dshi_3868at 81.343 kb on + strand, within Dshi_3868at 81.430 kb on + strand, within Dshi_3868at 81.438 kb on + strand, within Dshi_3868at 81.475 kb on + strand, within Dshi_3868at 81.531 kb on + strand, within Dshi_3868at 81.534 kb on + strand, within Dshi_3868at 81.563 kb on + strand, within Dshi_3868at 81.563 kb on + strand, within Dshi_3868at 81.568 kb on + strand, within Dshi_3868at 81.576 kb on - strand, within Dshi_3868at 81.626 kb on - strand, within Dshi_3868at 81.695 kb on + strand, within Dshi_3868at 81.695 kb on + strand, within Dshi_3868at 81.698 kb on - strand, within Dshi_3868at 81.732 kb on + strand, within Dshi_3868at 81.740 kb on - strand, within Dshi_3868at 81.742 kb on + strand, within Dshi_3868at 81.750 kb on - strand, within Dshi_3868at 81.807 kb on - strandat 81.807 kb on - strandat 81.825 kb on + strandat 81.825 kb on + strandat 81.833 kb on - strandat 81.833 kb on - strandat 81.860 kb on + strandat 81.897 kb on + strandat 81.905 kb on - strandat 81.907 kb on + strandat 81.953 kb on - strandat 81.957 kb on + strandat 81.967 kb on + strandat 82.085 kb on + strand, within Dshi_3869at 82.162 kb on + strand, within Dshi_3869at 82.170 kb on - strand, within Dshi_3869at 82.238 kb on + strand, within Dshi_3869at 82.262 kb on - strand, within Dshi_3869at 82.269 kb on + strand, within Dshi_3869at 82.277 kb on + strand, within Dshi_3869at 82.287 kb on + strand, within Dshi_3869at 82.308 kb on - strand, within Dshi_3869at 82.365 kb on - strand, within Dshi_3869at 82.374 kb on + strand, within Dshi_3869at 82.382 kb on - strand, within Dshi_3869at 82.382 kb on - strand, within Dshi_3869at 82.409 kb on + strand, within Dshi_3869at 82.414 kb on + strand, within Dshi_3869at 82.521 kb on + strand, within Dshi_3869at 82.570 kb on - strand, within Dshi_3869at 82.589 kb on - strand, within Dshi_3869at 82.749 kb on - strand, within Dshi_3869at 82.810 kb on - strand, within Dshi_3869at 82.825 kb on + strand, within Dshi_3869at 82.833 kb on + strand, within Dshi_3869at 82.858 kb on - strand, within Dshi_3869

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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79,928 + Dshi_3867 0.12 +1.7
79,936 - Dshi_3867 0.13 +1.4
79,938 + Dshi_3867 0.13 +1.4
79,943 + Dshi_3867 0.14 +0.1
79,947 + Dshi_3867 0.14 +1.3
79,974 - Dshi_3867 0.18 +0.8
80,009 + Dshi_3867 0.21 +1.8
80,011 + Dshi_3867 0.22 +0.8
80,039 - Dshi_3867 0.25 +1.5
80,047 + Dshi_3867 0.26 +1.2
80,171 - Dshi_3867 0.40 +1.4
80,198 + Dshi_3867 0.43 +1.1
80,399 - Dshi_3867 0.65 +0.8
80,428 + Dshi_3867 0.68 -0.2
80,428 + Dshi_3867 0.68 -0.8
80,428 + Dshi_3867 0.68 +0.5
80,466 - Dshi_3867 0.73 +1.4
80,519 + Dshi_3867 0.79 +1.7
80,534 + Dshi_3867 0.80 +0.7
80,554 + Dshi_3867 0.83 +1.3
80,603 + Dshi_3867 0.88 -0.2
80,643 + +2.0
80,683 + +0.4
80,683 + -0.8
80,683 + -0.9
80,683 - +1.3
80,698 + +2.1
80,711 - -1.6
80,758 - -1.2
80,769 + +0.2
80,777 - +1.9
80,803 - +0.1
80,815 - +0.8
80,830 + -0.1
80,948 + Dshi_3868 0.13 +3.4
81,006 - Dshi_3868 0.19 +1.6
81,029 - Dshi_3868 0.21 +0.8
81,086 - Dshi_3868 0.26 +1.9
81,101 - Dshi_3868 0.28 +1.5
81,107 - Dshi_3868 0.28 +1.8
81,166 + Dshi_3868 0.34 +2.1
81,201 - Dshi_3868 0.37 +1.0
81,270 + Dshi_3868 0.43 +1.4
81,270 + Dshi_3868 0.43 +0.6
81,319 + Dshi_3868 0.48 +0.5
81,326 + Dshi_3868 0.48 +1.6
81,327 - Dshi_3868 0.48 +1.3
81,343 + Dshi_3868 0.50 +1.6
81,430 + Dshi_3868 0.58 +1.6
81,438 + Dshi_3868 0.59 +1.4
81,475 + Dshi_3868 0.62 +1.9
81,531 + Dshi_3868 0.67 +2.0
81,534 + Dshi_3868 0.68 +0.9
81,563 + Dshi_3868 0.70 +0.9
81,563 + Dshi_3868 0.70 +1.4
81,568 + Dshi_3868 0.71 +1.4
81,576 - Dshi_3868 0.71 +0.9
81,626 - Dshi_3868 0.76 +2.2
81,695 + Dshi_3868 0.82 +3.1
81,695 + Dshi_3868 0.82 +1.3
81,698 - Dshi_3868 0.83 +1.6
81,732 + Dshi_3868 0.86 +1.9
81,740 - Dshi_3868 0.87 +0.9
81,742 + Dshi_3868 0.87 +2.5
81,750 - Dshi_3868 0.88 +1.3
81,807 - +0.4
81,807 - +2.0
81,825 + +2.4
81,825 + +1.5
81,833 - +1.2
81,833 - +1.1
81,860 + +0.8
81,897 + +0.7
81,905 - -0.1
81,907 + -0.4
81,953 - -0.1
81,957 + +0.4
81,967 + +0.1
82,085 + Dshi_3869 0.12 -1.5
82,162 + Dshi_3869 0.18 +1.1
82,170 - Dshi_3869 0.19 -0.1
82,238 + Dshi_3869 0.25 +0.3
82,262 - Dshi_3869 0.27 +0.3
82,269 + Dshi_3869 0.27 +0.3
82,277 + Dshi_3869 0.28 +0.1
82,287 + Dshi_3869 0.29 -2.6
82,308 - Dshi_3869 0.31 -0.9
82,365 - Dshi_3869 0.36 -1.1
82,374 + Dshi_3869 0.36 +0.0
82,382 - Dshi_3869 0.37 -0.2
82,382 - Dshi_3869 0.37 +1.0
82,409 + Dshi_3869 0.39 -0.5
82,414 + Dshi_3869 0.40 -0.4
82,521 + Dshi_3869 0.49 +0.5
82,570 - Dshi_3869 0.53 -0.8
82,589 - Dshi_3869 0.55 +0.9
82,749 - Dshi_3869 0.68 -0.4
82,810 - Dshi_3869 0.73 -0.9
82,825 + Dshi_3869 0.75 +1.1
82,833 + Dshi_3869 0.75 -0.3
82,858 - Dshi_3869 0.78 +0.3

Or see this region's nucleotide sequence