Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3559

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3557 and Dshi_3558 are separated by 12 nucleotidesDshi_3558 and Dshi_3559 are separated by 20 nucleotidesDshi_3559 and Dshi_3560 are separated by 153 nucleotidesDshi_3560 and Dshi_3561 are separated by 13 nucleotides Dshi_3557: Dshi_3557 - putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase (RefSeq), at 3,741,883 to 3,743,700 _3557 Dshi_3558: Dshi_3558 - hypothetical protein (RefSeq), at 3,743,713 to 3,744,228 _3558 Dshi_3559: Dshi_3559 - DNA polymerase III, epsilon subunit (RefSeq), at 3,744,249 to 3,745,706 _3559 Dshi_3560: Dshi_3560 - protein of unknown function DUF150 (RefSeq), at 3,745,860 to 3,746,450 _3560 Dshi_3561: Dshi_3561 - NusA antitermination factor (RefSeq), at 3,746,464 to 3,748,098 _3561 Position (kb) 3744 3745 3746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3743.280 kb on - strand, within Dshi_3557at 3743.298 kb on + strand, within Dshi_3557at 3743.318 kb on - strand, within Dshi_3557at 3743.487 kb on + strand, within Dshi_3557at 3743.521 kb on - strandat 3743.521 kb on - strandat 3743.545 kb on + strandat 3743.593 kb on - strandat 3743.695 kb on + strandat 3743.702 kb on - strandat 3743.761 kb on + strandat 3743.789 kb on - strand, within Dshi_3558at 3743.951 kb on - strand, within Dshi_3558at 3743.995 kb on + strand, within Dshi_3558at 3744.015 kb on - strand, within Dshi_3558at 3744.109 kb on + strand, within Dshi_3558at 3744.175 kb on + strand, within Dshi_3558at 3744.185 kb on + strandat 3744.187 kb on + strandat 3744.187 kb on + strandat 3744.193 kb on - strandat 3744.207 kb on + strandat 3744.234 kb on + strandat 3744.265 kb on + strandat 3744.265 kb on + strandat 3744.326 kb on + strandat 3744.615 kb on + strand, within Dshi_3559at 3744.644 kb on - strand, within Dshi_3559at 3744.671 kb on + strand, within Dshi_3559at 3744.681 kb on + strand, within Dshi_3559at 3744.689 kb on - strand, within Dshi_3559at 3744.695 kb on + strand, within Dshi_3559at 3744.782 kb on - strand, within Dshi_3559at 3744.793 kb on + strand, within Dshi_3559at 3744.970 kb on + strand, within Dshi_3559at 3744.970 kb on + strand, within Dshi_3559at 3745.296 kb on - strand, within Dshi_3559at 3745.389 kb on + strand, within Dshi_3559at 3745.401 kb on + strand, within Dshi_3559at 3745.416 kb on - strand, within Dshi_3559

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,743,280 - Dshi_3557 0.77 +1.1
3,743,298 + Dshi_3557 0.78 +1.1
3,743,318 - Dshi_3557 0.79 +1.1
3,743,487 + Dshi_3557 0.88 +0.4
3,743,521 - +0.5
3,743,521 - -0.3
3,743,545 + +0.8
3,743,593 - +0.7
3,743,695 + +1.2
3,743,702 - +0.5
3,743,761 + +2.2
3,743,789 - Dshi_3558 0.15 +1.8
3,743,951 - Dshi_3558 0.46 +3.4
3,743,995 + Dshi_3558 0.55 +2.0
3,744,015 - Dshi_3558 0.59 +1.6
3,744,109 + Dshi_3558 0.77 +1.4
3,744,175 + Dshi_3558 0.90 +0.4
3,744,185 + +2.1
3,744,187 + +0.9
3,744,187 + +1.7
3,744,193 - +0.6
3,744,207 + +1.1
3,744,234 + -2.4
3,744,265 + +1.5
3,744,265 + +1.5
3,744,326 + +1.9
3,744,615 + Dshi_3559 0.25 +1.9
3,744,644 - Dshi_3559 0.27 +0.7
3,744,671 + Dshi_3559 0.29 +1.8
3,744,681 + Dshi_3559 0.30 +1.6
3,744,689 - Dshi_3559 0.30 +2.0
3,744,695 + Dshi_3559 0.31 +1.4
3,744,782 - Dshi_3559 0.37 +1.8
3,744,793 + Dshi_3559 0.37 +2.2
3,744,970 + Dshi_3559 0.49 +2.3
3,744,970 + Dshi_3559 0.49 +2.1
3,745,296 - Dshi_3559 0.72 +2.1
3,745,389 + Dshi_3559 0.78 +2.0
3,745,401 + Dshi_3559 0.79 +2.5
3,745,416 - Dshi_3559 0.80 +1.6

Or see this region's nucleotide sequence