Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3525

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3523 and Dshi_3524 are separated by 3 nucleotidesDshi_3524 and Dshi_3525 overlap by 1 nucleotidesDshi_3525 and Dshi_3526 are separated by 132 nucleotides Dshi_3523: Dshi_3523 - photosynthetic reaction center L subunit (RefSeq), at 3,701,883 to 3,702,722 _3523 Dshi_3524: Dshi_3524 - photosynthetic reaction center, M subunit (RefSeq), at 3,702,726 to 3,703,718 _3524 Dshi_3525: Dshi_3525 - photosynthetic reaction centre cytochrome c subunit (RefSeq), at 3,703,718 to 3,704,800 _3525 Dshi_3526: Dshi_3526 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,704,933 to 3,706,909 _3526 Position (kb) 3703 3704 3705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3702.762 kb on + strandat 3702.762 kb on + strandat 3702.777 kb on - strandat 3702.832 kb on + strand, within Dshi_3524at 3702.974 kb on - strand, within Dshi_3524at 3703.003 kb on + strand, within Dshi_3524at 3703.117 kb on - strand, within Dshi_3524at 3703.204 kb on + strand, within Dshi_3524at 3703.241 kb on + strand, within Dshi_3524at 3703.283 kb on + strand, within Dshi_3524at 3703.401 kb on + strand, within Dshi_3524at 3703.481 kb on - strand, within Dshi_3524at 3703.507 kb on + strand, within Dshi_3524at 3703.621 kb on - strandat 3703.707 kb on - strandat 3703.709 kb on + strandat 3703.711 kb on - strandat 3703.765 kb on + strandat 3703.841 kb on - strand, within Dshi_3525at 3703.852 kb on - strand, within Dshi_3525at 3703.923 kb on + strand, within Dshi_3525at 3703.931 kb on - strand, within Dshi_3525at 3703.982 kb on - strand, within Dshi_3525at 3704.080 kb on + strand, within Dshi_3525at 3704.103 kb on + strand, within Dshi_3525at 3704.118 kb on + strand, within Dshi_3525at 3704.120 kb on - strand, within Dshi_3525at 3704.128 kb on + strand, within Dshi_3525at 3704.128 kb on + strand, within Dshi_3525at 3704.194 kb on - strand, within Dshi_3525at 3704.202 kb on + strand, within Dshi_3525at 3704.370 kb on + strand, within Dshi_3525at 3704.477 kb on - strand, within Dshi_3525at 3704.540 kb on + strand, within Dshi_3525at 3704.547 kb on + strand, within Dshi_3525at 3704.565 kb on - strand, within Dshi_3525at 3704.676 kb on + strand, within Dshi_3525at 3705.054 kb on + strandat 3705.109 kb on + strandat 3705.190 kb on - strand, within Dshi_3526at 3705.264 kb on + strand, within Dshi_3526at 3705.329 kb on - strand, within Dshi_3526at 3705.329 kb on - strand, within Dshi_3526at 3705.475 kb on - strand, within Dshi_3526at 3705.577 kb on + strand, within Dshi_3526at 3705.637 kb on + strand, within Dshi_3526at 3705.711 kb on + strand, within Dshi_3526at 3705.725 kb on + strand, within Dshi_3526at 3705.781 kb on + strand, within Dshi_3526

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,702,762 + +1.6
3,702,762 + -2.8
3,702,777 - -0.4
3,702,832 + Dshi_3524 0.11 -0.3
3,702,974 - Dshi_3524 0.25 +0.3
3,703,003 + Dshi_3524 0.28 +0.2
3,703,117 - Dshi_3524 0.39 -0.3
3,703,204 + Dshi_3524 0.48 +0.6
3,703,241 + Dshi_3524 0.52 -0.4
3,703,283 + Dshi_3524 0.56 +0.7
3,703,401 + Dshi_3524 0.68 -2.0
3,703,481 - Dshi_3524 0.76 -0.1
3,703,507 + Dshi_3524 0.79 +0.2
3,703,621 - -0.5
3,703,707 - -1.1
3,703,709 + -0.6
3,703,711 - -0.4
3,703,765 + +0.9
3,703,841 - Dshi_3525 0.11 +0.4
3,703,852 - Dshi_3525 0.12 +0.9
3,703,923 + Dshi_3525 0.19 +0.8
3,703,931 - Dshi_3525 0.20 +0.3
3,703,982 - Dshi_3525 0.24 +0.2
3,704,080 + Dshi_3525 0.33 -0.1
3,704,103 + Dshi_3525 0.36 -1.0
3,704,118 + Dshi_3525 0.37 -0.2
3,704,120 - Dshi_3525 0.37 -0.1
3,704,128 + Dshi_3525 0.38 -0.1
3,704,128 + Dshi_3525 0.38 +0.1
3,704,194 - Dshi_3525 0.44 +0.6
3,704,202 + Dshi_3525 0.45 -1.3
3,704,370 + Dshi_3525 0.60 -0.4
3,704,477 - Dshi_3525 0.70 -0.1
3,704,540 + Dshi_3525 0.76 +0.4
3,704,547 + Dshi_3525 0.77 +0.8
3,704,565 - Dshi_3525 0.78 -1.3
3,704,676 + Dshi_3525 0.88 -1.3
3,705,054 + +0.3
3,705,109 + -0.6
3,705,190 - Dshi_3526 0.13 +0.7
3,705,264 + Dshi_3526 0.17 -0.0
3,705,329 - Dshi_3526 0.20 -1.5
3,705,329 - Dshi_3526 0.20 -0.1
3,705,475 - Dshi_3526 0.27 -0.9
3,705,577 + Dshi_3526 0.33 +1.4
3,705,637 + Dshi_3526 0.36 +0.4
3,705,711 + Dshi_3526 0.39 -1.5
3,705,725 + Dshi_3526 0.40 -0.7
3,705,781 + Dshi_3526 0.43 +1.8

Or see this region's nucleotide sequence