Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3374

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3373 and Dshi_3374 are separated by 136 nucleotidesDshi_3374 and Dshi_3375 are separated by 6 nucleotides Dshi_3373: Dshi_3373 - chromosomal replication initiator protein DnaA (RefSeq), at 3,544,704 to 3,546,086 _3373 Dshi_3374: Dshi_3374 - DNA polymerase III, beta subunit (RefSeq), at 3,546,223 to 3,547,341 _3374 Dshi_3375: Dshi_3375 - SMC domain protein (RefSeq), at 3,547,348 to 3,548,433 _3375 Position (kb) 3546 3547 3548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3546.112 kb on + strandat 3546.129 kb on - strandat 3547.335 kb on + strandat 3547.371 kb on - strandat 3547.397 kb on + strandat 3547.410 kb on - strandat 3547.440 kb on + strandat 3547.542 kb on + strand, within Dshi_3375at 3547.706 kb on - strand, within Dshi_3375at 3547.714 kb on + strand, within Dshi_3375at 3547.714 kb on + strand, within Dshi_3375at 3547.722 kb on - strand, within Dshi_3375at 3547.722 kb on - strand, within Dshi_3375at 3547.741 kb on + strand, within Dshi_3375at 3547.759 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.971 kb on + strand, within Dshi_3375at 3547.971 kb on - strand, within Dshi_3375at 3547.971 kb on - strand, within Dshi_3375at 3548.037 kb on - strand, within Dshi_3375at 3548.099 kb on + strand, within Dshi_3375at 3548.099 kb on + strand, within Dshi_3375at 3548.107 kb on - strand, within Dshi_3375at 3548.107 kb on - strand, within Dshi_3375at 3548.154 kb on + strand, within Dshi_3375at 3548.154 kb on + strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.169 kb on + strand, within Dshi_3375at 3548.172 kb on - strand, within Dshi_3375at 3548.207 kb on + strand, within Dshi_3375at 3548.261 kb on + strand, within Dshi_3375at 3548.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,546,112 + -1.2
3,546,129 - +0.8
3,547,335 + +0.6
3,547,371 - +1.8
3,547,397 + -0.1
3,547,410 - -2.1
3,547,440 + +0.3
3,547,542 + Dshi_3375 0.18 +1.8
3,547,706 - Dshi_3375 0.33 +0.2
3,547,714 + Dshi_3375 0.34 -2.5
3,547,714 + Dshi_3375 0.34 +1.1
3,547,722 - Dshi_3375 0.34 +1.0
3,547,722 - Dshi_3375 0.34 +0.8
3,547,741 + Dshi_3375 0.36 +0.6
3,547,759 + Dshi_3375 0.38 +1.0
3,547,963 + Dshi_3375 0.57 -1.0
3,547,963 + Dshi_3375 0.57 -2.8
3,547,963 + Dshi_3375 0.57 -1.3
3,547,971 + Dshi_3375 0.57 +0.4
3,547,971 - Dshi_3375 0.57 +0.6
3,547,971 - Dshi_3375 0.57 +0.2
3,548,037 - Dshi_3375 0.63 -0.4
3,548,099 + Dshi_3375 0.69 -0.0
3,548,099 + Dshi_3375 0.69 -0.7
3,548,107 - Dshi_3375 0.70 +0.4
3,548,107 - Dshi_3375 0.70 -0.8
3,548,154 + Dshi_3375 0.74 -0.1
3,548,154 + Dshi_3375 0.74 -0.6
3,548,162 - Dshi_3375 0.75 -0.5
3,548,162 - Dshi_3375 0.75 -1.0
3,548,162 - Dshi_3375 0.75 -0.6
3,548,169 + Dshi_3375 0.76 +0.5
3,548,172 - Dshi_3375 0.76 +1.7
3,548,207 + Dshi_3375 0.79 -1.7
3,548,261 + Dshi_3375 0.84 -0.0
3,548,341 + -2.1

Or see this region's nucleotide sequence