Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3333

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3332 and Dshi_3333 overlap by 4 nucleotidesDshi_3333 and Dshi_3334 are separated by 58 nucleotides Dshi_3332: Dshi_3332 - histidine kinase (RefSeq), at 3,497,022 to 3,499,481 _3332 Dshi_3333: Dshi_3333 - protein of unknown function DUF328 (RefSeq), at 3,499,478 to 3,500,281 _3333 Dshi_3334: Dshi_3334 - ATP-dependent DNA helicase RecQ (RefSeq), at 3,500,340 to 3,502,379 _3334 Position (kb) 3499 3500 3501Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3498.497 kb on - strand, within Dshi_3332at 3498.526 kb on - strand, within Dshi_3332at 3498.546 kb on - strand, within Dshi_3332at 3498.716 kb on + strand, within Dshi_3332at 3498.732 kb on - strand, within Dshi_3332at 3498.828 kb on - strand, within Dshi_3332at 3498.905 kb on + strand, within Dshi_3332at 3498.951 kb on - strand, within Dshi_3332at 3499.030 kb on - strand, within Dshi_3332at 3499.042 kb on - strand, within Dshi_3332at 3499.085 kb on - strand, within Dshi_3332at 3499.203 kb on + strand, within Dshi_3332at 3499.207 kb on - strand, within Dshi_3332at 3499.211 kb on - strand, within Dshi_3332at 3499.213 kb on + strand, within Dshi_3332at 3499.221 kb on - strand, within Dshi_3332at 3499.333 kb on + strandat 3499.430 kb on + strandat 3499.619 kb on + strand, within Dshi_3333at 3499.677 kb on + strand, within Dshi_3333at 3499.735 kb on - strand, within Dshi_3333at 3499.915 kb on - strand, within Dshi_3333at 3499.916 kb on - strand, within Dshi_3333at 3499.966 kb on - strand, within Dshi_3333at 3500.008 kb on - strand, within Dshi_3333at 3500.025 kb on - strand, within Dshi_3333at 3500.075 kb on - strand, within Dshi_3333at 3500.133 kb on + strand, within Dshi_3333at 3500.188 kb on - strand, within Dshi_3333at 3500.337 kb on + strandat 3500.361 kb on + strandat 3500.480 kb on - strandat 3500.535 kb on + strandat 3500.574 kb on - strand, within Dshi_3334at 3500.587 kb on + strand, within Dshi_3334at 3500.933 kb on - strand, within Dshi_3334at 3500.974 kb on - strand, within Dshi_3334at 3500.988 kb on + strand, within Dshi_3334at 3501.029 kb on + strand, within Dshi_3334at 3501.045 kb on + strand, within Dshi_3334at 3501.070 kb on - strand, within Dshi_3334at 3501.172 kb on - strand, within Dshi_3334at 3501.223 kb on + strand, within Dshi_3334

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,498,497 - Dshi_3332 0.60 +0.4
3,498,526 - Dshi_3332 0.61 -0.1
3,498,546 - Dshi_3332 0.62 +3.3
3,498,716 + Dshi_3332 0.69 -1.0
3,498,732 - Dshi_3332 0.70 +0.5
3,498,828 - Dshi_3332 0.73 +1.7
3,498,905 + Dshi_3332 0.77 -2.4
3,498,951 - Dshi_3332 0.78 -1.3
3,499,030 - Dshi_3332 0.82 -1.0
3,499,042 - Dshi_3332 0.82 -1.1
3,499,085 - Dshi_3332 0.84 -0.8
3,499,203 + Dshi_3332 0.89 -0.1
3,499,207 - Dshi_3332 0.89 +0.7
3,499,211 - Dshi_3332 0.89 +1.5
3,499,213 + Dshi_3332 0.89 +0.5
3,499,221 - Dshi_3332 0.89 +0.3
3,499,333 + +0.1
3,499,430 + +0.0
3,499,619 + Dshi_3333 0.18 +1.1
3,499,677 + Dshi_3333 0.25 +0.5
3,499,735 - Dshi_3333 0.32 -0.6
3,499,915 - Dshi_3333 0.54 +0.3
3,499,916 - Dshi_3333 0.54 +0.1
3,499,966 - Dshi_3333 0.61 -0.3
3,500,008 - Dshi_3333 0.66 -0.4
3,500,025 - Dshi_3333 0.68 +0.8
3,500,075 - Dshi_3333 0.74 -0.3
3,500,133 + Dshi_3333 0.81 -0.4
3,500,188 - Dshi_3333 0.88 +0.4
3,500,337 + -0.3
3,500,361 + +0.3
3,500,480 - -2.3
3,500,535 + +0.9
3,500,574 - Dshi_3334 0.11 -0.7
3,500,587 + Dshi_3334 0.12 -0.3
3,500,933 - Dshi_3334 0.29 +1.6
3,500,974 - Dshi_3334 0.31 -0.1
3,500,988 + Dshi_3334 0.32 +0.7
3,501,029 + Dshi_3334 0.34 +0.1
3,501,045 + Dshi_3334 0.35 -0.3
3,501,070 - Dshi_3334 0.36 -1.4
3,501,172 - Dshi_3334 0.41 +0.5
3,501,223 + Dshi_3334 0.43 +0.1

Or see this region's nucleotide sequence