Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3323

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3322 and Dshi_3323 are separated by 274 nucleotidesDshi_3323 and Dshi_3324 overlap by 23 nucleotides Dshi_3322: Dshi_3322 - transcriptional regulator, LacI family (RefSeq), at 3,484,266 to 3,485,303 _3322 Dshi_3323: Dshi_3323 - transcriptional regulator, GntR family (RefSeq), at 3,485,578 to 3,486,258 _3323 Dshi_3324: Dshi_3324 - FAD linked oxidase domain protein (RefSeq), at 3,486,236 to 3,489,157 _3324 Position (kb) 3485 3486 3487Strain fitness (log2 ratio) -2 -1 0 1 2at 3484.689 kb on - strand, within Dshi_3322at 3484.732 kb on - strand, within Dshi_3322at 3484.781 kb on - strand, within Dshi_3322at 3484.885 kb on + strand, within Dshi_3322at 3484.893 kb on - strand, within Dshi_3322at 3484.932 kb on + strand, within Dshi_3322at 3485.157 kb on + strand, within Dshi_3322at 3485.165 kb on - strand, within Dshi_3322at 3485.167 kb on - strand, within Dshi_3322at 3485.227 kb on - strandat 3485.234 kb on + strandat 3485.234 kb on + strandat 3485.242 kb on - strandat 3485.263 kb on + strandat 3485.269 kb on - strandat 3485.276 kb on + strandat 3485.313 kb on + strandat 3485.337 kb on - strandat 3485.361 kb on + strandat 3485.372 kb on + strandat 3485.374 kb on - strandat 3485.384 kb on - strandat 3485.384 kb on - strandat 3485.386 kb on - strandat 3485.391 kb on - strandat 3485.397 kb on + strandat 3485.412 kb on + strandat 3485.415 kb on - strandat 3485.425 kb on - strandat 3485.440 kb on - strandat 3485.481 kb on + strandat 3485.554 kb on - strandat 3485.562 kb on + strandat 3485.565 kb on - strandat 3485.693 kb on + strand, within Dshi_3323at 3485.701 kb on - strand, within Dshi_3323at 3485.963 kb on - strand, within Dshi_3323at 3485.973 kb on + strand, within Dshi_3323at 3485.990 kb on + strand, within Dshi_3323at 3486.107 kb on - strand, within Dshi_3323at 3486.144 kb on + strand, within Dshi_3323at 3486.144 kb on + strand, within Dshi_3323at 3486.152 kb on - strand, within Dshi_3323at 3486.391 kb on + strandat 3486.553 kb on + strand, within Dshi_3324at 3486.628 kb on + strand, within Dshi_3324at 3486.882 kb on - strand, within Dshi_3324at 3486.894 kb on + strand, within Dshi_3324at 3486.999 kb on - strand, within Dshi_3324at 3487.015 kb on - strand, within Dshi_3324at 3487.110 kb on - strandat 3487.132 kb on + strand, within Dshi_3324at 3487.227 kb on - strand, within Dshi_3324at 3487.236 kb on - strand, within Dshi_3324at 3487.253 kb on + strand, within Dshi_3324

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,484,689 - Dshi_3322 0.41 -0.5
3,484,732 - Dshi_3322 0.45 -0.1
3,484,781 - Dshi_3322 0.50 +0.2
3,484,885 + Dshi_3322 0.60 +1.0
3,484,893 - Dshi_3322 0.60 +0.2
3,484,932 + Dshi_3322 0.64 +1.1
3,485,157 + Dshi_3322 0.86 +0.5
3,485,165 - Dshi_3322 0.87 -1.6
3,485,167 - Dshi_3322 0.87 +0.1
3,485,227 - +0.8
3,485,234 + +0.1
3,485,234 + +0.8
3,485,242 - -0.9
3,485,263 + +0.1
3,485,269 - +0.6
3,485,276 + +0.4
3,485,313 + -0.1
3,485,337 - +0.1
3,485,361 + -0.6
3,485,372 + +0.2
3,485,374 - -0.7
3,485,384 - +0.5
3,485,384 - +0.9
3,485,386 - +0.4
3,485,391 - +0.4
3,485,397 + +1.2
3,485,412 + +0.1
3,485,415 - -0.7
3,485,425 - +0.1
3,485,440 - +0.8
3,485,481 + +0.4
3,485,554 - -0.8
3,485,562 + +0.7
3,485,565 - -2.1
3,485,693 + Dshi_3323 0.17 -1.3
3,485,701 - Dshi_3323 0.18 +2.4
3,485,963 - Dshi_3323 0.57 +0.4
3,485,973 + Dshi_3323 0.58 -0.7
3,485,990 + Dshi_3323 0.60 +0.4
3,486,107 - Dshi_3323 0.78 -0.8
3,486,144 + Dshi_3323 0.83 -0.6
3,486,144 + Dshi_3323 0.83 -1.4
3,486,152 - Dshi_3323 0.84 -1.3
3,486,391 + +1.4
3,486,553 + Dshi_3324 0.11 +1.2
3,486,628 + Dshi_3324 0.13 -1.8
3,486,882 - Dshi_3324 0.22 +2.4
3,486,894 + Dshi_3324 0.23 -0.7
3,486,999 - Dshi_3324 0.26 +0.0
3,487,015 - Dshi_3324 0.27 +0.7
3,487,110 - -0.6
3,487,132 + Dshi_3324 0.31 +0.4
3,487,227 - Dshi_3324 0.34 -0.0
3,487,236 - Dshi_3324 0.34 -0.8
3,487,253 + Dshi_3324 0.35 +0.3

Or see this region's nucleotide sequence