Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3295
Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Thallium(I) acetate 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,460,927 | - | Dshi_3294 | 0.49 | +0.9 | |
3,460,971 | - | Dshi_3294 | 0.52 | +1.2 | |
3,460,998 | - | Dshi_3294 | 0.53 | +2.1 | |
3,461,087 | - | Dshi_3294 | 0.58 | +1.6 | |
3,461,143 | - | Dshi_3294 | 0.61 | +1.1 | |
3,461,190 | - | Dshi_3294 | 0.63 | +1.3 | |
3,461,266 | + | Dshi_3294 | 0.67 | +0.4 | |
3,461,400 | + | Dshi_3294 | 0.74 | +0.5 | |
3,461,400 | + | Dshi_3294 | 0.74 | +1.9 | |
3,461,514 | - | Dshi_3294 | 0.80 | +1.1 | |
3,461,531 | + | Dshi_3294 | 0.81 | +1.7 | |
3,461,661 | + | Dshi_3294 | 0.87 | +0.6 | |
3,461,701 | + | Dshi_3294 | 0.89 | +1.5 | |
3,461,825 | + | +0.2 | |||
3,461,833 | - | +2.3 | |||
3,462,436 | + | Dshi_3295 | 0.58 | +0.2 | |
3,462,836 | - | Dshi_3296 | 0.14 | +0.2 | |
3,463,089 | + | +0.1 | |||
3,463,097 | - | +0.6 | |||
3,463,107 | - | -0.7 | |||
3,463,112 | - | +0.4 | |||
3,463,239 | + | Dshi_3297 | 0.21 | +0.2 | |
3,463,357 | + | Dshi_3297 | 0.33 | -1.0 | |
3,463,449 | + | Dshi_3297 | 0.43 | -0.5 | |
3,463,655 | - | Dshi_3297 | 0.65 | -0.3 | |
3,463,747 | + | Dshi_3297 | 0.75 | +1.2 | |
3,463,762 | + | Dshi_3297 | 0.76 | -0.6 | |
3,463,793 | - | Dshi_3297 | 0.80 | -0.2 |
Or see this region's nucleotide sequence