Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3295

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3294 and Dshi_3295 are separated by 20 nucleotidesDshi_3295 and Dshi_3296 are separated by 3 nucleotidesDshi_3296 and Dshi_3297 overlap by 4 nucleotides Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903 _3294 Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799 _3295 Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045 _3296 Dshi_3297: Dshi_3297 - histone deacetylase superfamily (RefSeq), at 3,463,042 to 3,463,983 _3297 Position (kb) 3461 3462 3463Strain fitness (log2 ratio) -1 0 1 2at 3460.927 kb on - strand, within Dshi_3294at 3460.971 kb on - strand, within Dshi_3294at 3460.998 kb on - strand, within Dshi_3294at 3461.087 kb on - strand, within Dshi_3294at 3461.143 kb on - strand, within Dshi_3294at 3461.190 kb on - strand, within Dshi_3294at 3461.266 kb on + strand, within Dshi_3294at 3461.400 kb on + strand, within Dshi_3294at 3461.400 kb on + strand, within Dshi_3294at 3461.514 kb on - strand, within Dshi_3294at 3461.531 kb on + strand, within Dshi_3294at 3461.661 kb on + strand, within Dshi_3294at 3461.701 kb on + strand, within Dshi_3294at 3461.825 kb on + strandat 3461.833 kb on - strandat 3462.436 kb on + strand, within Dshi_3295at 3462.836 kb on - strand, within Dshi_3296at 3463.089 kb on + strandat 3463.097 kb on - strandat 3463.107 kb on - strandat 3463.112 kb on - strandat 3463.239 kb on + strand, within Dshi_3297at 3463.357 kb on + strand, within Dshi_3297at 3463.449 kb on + strand, within Dshi_3297at 3463.655 kb on - strand, within Dshi_3297at 3463.747 kb on + strand, within Dshi_3297at 3463.762 kb on + strand, within Dshi_3297at 3463.793 kb on - strand, within Dshi_3297

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,460,927 - Dshi_3294 0.49 +0.9
3,460,971 - Dshi_3294 0.52 +1.2
3,460,998 - Dshi_3294 0.53 +2.1
3,461,087 - Dshi_3294 0.58 +1.6
3,461,143 - Dshi_3294 0.61 +1.1
3,461,190 - Dshi_3294 0.63 +1.3
3,461,266 + Dshi_3294 0.67 +0.4
3,461,400 + Dshi_3294 0.74 +0.5
3,461,400 + Dshi_3294 0.74 +1.9
3,461,514 - Dshi_3294 0.80 +1.1
3,461,531 + Dshi_3294 0.81 +1.7
3,461,661 + Dshi_3294 0.87 +0.6
3,461,701 + Dshi_3294 0.89 +1.5
3,461,825 + +0.2
3,461,833 - +2.3
3,462,436 + Dshi_3295 0.58 +0.2
3,462,836 - Dshi_3296 0.14 +0.2
3,463,089 + +0.1
3,463,097 - +0.6
3,463,107 - -0.7
3,463,112 - +0.4
3,463,239 + Dshi_3297 0.21 +0.2
3,463,357 + Dshi_3297 0.33 -1.0
3,463,449 + Dshi_3297 0.43 -0.5
3,463,655 - Dshi_3297 0.65 -0.3
3,463,747 + Dshi_3297 0.75 +1.2
3,463,762 + Dshi_3297 0.76 -0.6
3,463,793 - Dshi_3297 0.80 -0.2

Or see this region's nucleotide sequence