Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3286

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3284 and Dshi_3285 overlap by 4 nucleotidesDshi_3285 and Dshi_3286 are separated by 15 nucleotidesDshi_3286 and Dshi_3287 are separated by 58 nucleotides Dshi_3284: Dshi_3284 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 3,450,303 to 3,452,075 _3284 Dshi_3285: Dshi_3285 - Thioredoxin domain (RefSeq), at 3,452,072 to 3,452,488 _3285 Dshi_3286: Dshi_3286 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 3,452,504 to 3,453,217 _3286 Dshi_3287: Dshi_3287 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,453,276 to 3,454,142 _3287 Position (kb) 3452 3453 3454Strain fitness (log2 ratio) -2 -1 0 1at 3451.632 kb on + strand, within Dshi_3284at 3451.812 kb on - strand, within Dshi_3284at 3451.899 kb on - strandat 3451.910 kb on + strandat 3451.973 kb on + strandat 3451.976 kb on - strandat 3452.048 kb on + strandat 3452.061 kb on - strandat 3452.232 kb on - strand, within Dshi_3285at 3452.312 kb on - strand, within Dshi_3285at 3452.314 kb on + strand, within Dshi_3285at 3452.392 kb on + strand, within Dshi_3285at 3452.400 kb on + strand, within Dshi_3285at 3452.406 kb on - strand, within Dshi_3285at 3452.491 kb on - strandat 3452.543 kb on + strandat 3452.585 kb on + strand, within Dshi_3286at 3452.600 kb on - strand, within Dshi_3286at 3452.654 kb on - strand, within Dshi_3286at 3452.691 kb on + strand, within Dshi_3286at 3452.740 kb on + strand, within Dshi_3286at 3452.798 kb on + strand, within Dshi_3286at 3452.817 kb on - strand, within Dshi_3286at 3452.830 kb on - strand, within Dshi_3286at 3453.005 kb on + strand, within Dshi_3286at 3453.033 kb on - strand, within Dshi_3286at 3453.224 kb on + strandat 3453.232 kb on - strandat 3453.291 kb on - strandat 3453.342 kb on - strandat 3453.488 kb on + strand, within Dshi_3287at 3453.512 kb on - strand, within Dshi_3287at 3453.533 kb on + strand, within Dshi_3287at 3453.615 kb on + strand, within Dshi_3287at 3453.687 kb on - strand, within Dshi_3287at 3453.864 kb on + strand, within Dshi_3287at 3453.872 kb on - strand, within Dshi_3287at 3453.886 kb on + strand, within Dshi_3287at 3453.896 kb on + strand, within Dshi_3287at 3454.090 kb on + strandat 3454.095 kb on + strandat 3454.103 kb on - strandat 3454.108 kb on - strandat 3454.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,451,632 + Dshi_3284 0.75 +0.3
3,451,812 - Dshi_3284 0.85 -0.3
3,451,899 - +1.4
3,451,910 + +0.1
3,451,973 + -0.9
3,451,976 - -0.2
3,452,048 + +0.2
3,452,061 - +0.2
3,452,232 - Dshi_3285 0.38 +1.1
3,452,312 - Dshi_3285 0.58 +0.0
3,452,314 + Dshi_3285 0.58 +0.6
3,452,392 + Dshi_3285 0.77 -0.3
3,452,400 + Dshi_3285 0.79 -0.6
3,452,406 - Dshi_3285 0.80 -2.3
3,452,491 - +0.7
3,452,543 + +0.0
3,452,585 + Dshi_3286 0.11 -0.4
3,452,600 - Dshi_3286 0.13 -2.0
3,452,654 - Dshi_3286 0.21 -2.4
3,452,691 + Dshi_3286 0.26 -1.2
3,452,740 + Dshi_3286 0.33 -1.0
3,452,798 + Dshi_3286 0.41 -0.0
3,452,817 - Dshi_3286 0.44 -1.9
3,452,830 - Dshi_3286 0.46 -0.9
3,453,005 + Dshi_3286 0.70 -0.0
3,453,033 - Dshi_3286 0.74 -1.0
3,453,224 + -0.2
3,453,232 - -0.1
3,453,291 - -2.2
3,453,342 - +0.8
3,453,488 + Dshi_3287 0.24 -0.3
3,453,512 - Dshi_3287 0.27 -0.5
3,453,533 + Dshi_3287 0.30 -0.5
3,453,615 + Dshi_3287 0.39 +0.8
3,453,687 - Dshi_3287 0.47 -1.2
3,453,864 + Dshi_3287 0.68 +0.7
3,453,872 - Dshi_3287 0.69 +0.4
3,453,886 + Dshi_3287 0.70 -0.1
3,453,896 + Dshi_3287 0.72 +0.5
3,454,090 + +1.3
3,454,095 + +0.1
3,454,103 - +0.0
3,454,108 - +0.3
3,454,128 + -0.9

Or see this region's nucleotide sequence