Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3283

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3282 and Dshi_3283 overlap by 4 nucleotidesDshi_3283 and Dshi_3284 overlap by 4 nucleotides Dshi_3282: Dshi_3282 - formate dehydrogenase subunit FdhD (RefSeq), at 3,448,790 to 3,449,674 _3282 Dshi_3283: Dshi_3283 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 3,449,671 to 3,450,306 _3283 Dshi_3284: Dshi_3284 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 3,450,303 to 3,452,075 _3284 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -2 -1 0 1 2at 3448.730 kb on - strandat 3448.735 kb on + strandat 3448.735 kb on + strandat 3448.746 kb on + strandat 3448.783 kb on - strandat 3448.796 kb on + strandat 3448.804 kb on - strandat 3448.835 kb on - strandat 3448.882 kb on - strand, within Dshi_3282at 3448.985 kb on - strand, within Dshi_3282at 3449.023 kb on + strandat 3449.023 kb on + strand, within Dshi_3282at 3449.053 kb on - strand, within Dshi_3282at 3449.232 kb on + strand, within Dshi_3282at 3449.267 kb on - strand, within Dshi_3282at 3449.273 kb on - strand, within Dshi_3282at 3449.328 kb on + strand, within Dshi_3282at 3449.515 kb on - strand, within Dshi_3282at 3449.658 kb on + strandat 3449.668 kb on + strandat 3449.695 kb on - strandat 3449.736 kb on + strand, within Dshi_3283at 3450.030 kb on - strand, within Dshi_3283at 3450.148 kb on + strand, within Dshi_3283at 3450.185 kb on - strand, within Dshi_3283at 3450.185 kb on - strand, within Dshi_3283at 3450.227 kb on + strand, within Dshi_3283at 3450.254 kb on + strandat 3450.571 kb on + strand, within Dshi_3284at 3450.771 kb on - strand, within Dshi_3284at 3450.777 kb on - strand, within Dshi_3284at 3450.917 kb on - strand, within Dshi_3284at 3450.969 kb on - strand, within Dshi_3284at 3451.028 kb on + strand, within Dshi_3284at 3451.280 kb on + strand, within Dshi_3284

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,448,730 - +0.6
3,448,735 + -0.5
3,448,735 + +0.4
3,448,746 + +0.3
3,448,783 - -0.4
3,448,796 + -0.1
3,448,804 - +0.6
3,448,835 - -0.4
3,448,882 - Dshi_3282 0.10 -2.5
3,448,985 - Dshi_3282 0.22 +0.9
3,449,023 + +2.0
3,449,023 + Dshi_3282 0.26 +0.3
3,449,053 - Dshi_3282 0.30 +0.3
3,449,232 + Dshi_3282 0.50 +0.0
3,449,267 - Dshi_3282 0.54 -0.6
3,449,273 - Dshi_3282 0.55 -0.6
3,449,328 + Dshi_3282 0.61 -0.2
3,449,515 - Dshi_3282 0.82 +0.5
3,449,658 + +1.0
3,449,668 + +0.9
3,449,695 - +0.4
3,449,736 + Dshi_3283 0.10 +0.5
3,450,030 - Dshi_3283 0.56 +0.0
3,450,148 + Dshi_3283 0.75 +0.5
3,450,185 - Dshi_3283 0.81 +1.9
3,450,185 - Dshi_3283 0.81 +0.8
3,450,227 + Dshi_3283 0.87 -1.3
3,450,254 + -0.2
3,450,571 + Dshi_3284 0.15 +0.1
3,450,771 - Dshi_3284 0.26 +0.0
3,450,777 - Dshi_3284 0.27 -0.4
3,450,917 - Dshi_3284 0.35 -0.9
3,450,969 - Dshi_3284 0.38 -0.3
3,451,028 + Dshi_3284 0.41 -0.7
3,451,280 + Dshi_3284 0.55 +0.9

Or see this region's nucleotide sequence