Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3133

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3131 and Dshi_3132 overlap by 1 nucleotidesDshi_3132 and Dshi_3133 are separated by 38 nucleotidesDshi_3133 and Dshi_3134 overlap by 26 nucleotides Dshi_3131: Dshi_3131 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,299,407 to 3,300,204 _3131 Dshi_3132: Dshi_3132 - hypothetical protein (RefSeq), at 3,300,204 to 3,300,602 _3132 Dshi_3133: Dshi_3133 - transcriptional repressor, CopY family (RefSeq), at 3,300,641 to 3,301,048 _3133 Dshi_3134: Dshi_3134 - peptidase M56 BlaR1 (RefSeq), at 3,301,023 to 3,302,168 _3134 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -2 -1 0 1 2at 3299.771 kb on - strand, within Dshi_3131at 3299.806 kb on + strand, within Dshi_3131at 3299.842 kb on + strand, within Dshi_3131at 3299.850 kb on - strand, within Dshi_3131at 3299.865 kb on - strand, within Dshi_3131at 3299.902 kb on + strand, within Dshi_3131at 3300.018 kb on + strand, within Dshi_3131at 3300.069 kb on - strand, within Dshi_3131at 3300.165 kb on + strandat 3300.180 kb on + strandat 3300.315 kb on + strand, within Dshi_3132at 3300.450 kb on + strand, within Dshi_3132at 3300.457 kb on + strand, within Dshi_3132at 3300.509 kb on - strand, within Dshi_3132at 3300.514 kb on - strand, within Dshi_3132at 3300.569 kb on + strandat 3300.589 kb on + strandat 3300.672 kb on - strandat 3300.708 kb on - strand, within Dshi_3133at 3300.766 kb on + strand, within Dshi_3133at 3300.825 kb on + strand, within Dshi_3133at 3300.855 kb on - strand, within Dshi_3133at 3300.868 kb on - strand, within Dshi_3133at 3300.883 kb on + strand, within Dshi_3133at 3300.936 kb on + strand, within Dshi_3133at 3300.944 kb on - strand, within Dshi_3133at 3301.004 kb on + strand, within Dshi_3133at 3301.023 kb on - strandat 3301.121 kb on + strandat 3301.129 kb on - strandat 3301.136 kb on - strandat 3301.163 kb on + strand, within Dshi_3134at 3301.326 kb on + strand, within Dshi_3134at 3301.327 kb on - strand, within Dshi_3134at 3301.405 kb on - strand, within Dshi_3134at 3301.586 kb on - strand, within Dshi_3134at 3301.860 kb on - strand, within Dshi_3134at 3301.972 kb on - strand, within Dshi_3134

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,299,771 - Dshi_3131 0.46 +0.2
3,299,806 + Dshi_3131 0.50 +0.6
3,299,842 + Dshi_3131 0.55 +0.0
3,299,850 - Dshi_3131 0.56 +0.8
3,299,865 - Dshi_3131 0.57 +1.4
3,299,902 + Dshi_3131 0.62 +0.2
3,300,018 + Dshi_3131 0.77 +2.4
3,300,069 - Dshi_3131 0.83 +1.3
3,300,165 + +0.1
3,300,180 + +0.6
3,300,315 + Dshi_3132 0.28 -0.1
3,300,450 + Dshi_3132 0.62 -2.1
3,300,457 + Dshi_3132 0.63 +0.5
3,300,509 - Dshi_3132 0.76 -0.4
3,300,514 - Dshi_3132 0.78 +1.1
3,300,569 + -0.2
3,300,589 + +0.3
3,300,672 - +0.6
3,300,708 - Dshi_3133 0.16 +0.6
3,300,766 + Dshi_3133 0.31 +0.5
3,300,825 + Dshi_3133 0.45 -1.0
3,300,855 - Dshi_3133 0.52 -0.5
3,300,868 - Dshi_3133 0.56 -0.8
3,300,883 + Dshi_3133 0.59 -1.1
3,300,936 + Dshi_3133 0.72 -0.1
3,300,944 - Dshi_3133 0.74 -2.3
3,301,004 + Dshi_3133 0.89 -2.1
3,301,023 - +0.0
3,301,121 + +1.0
3,301,129 - -1.0
3,301,136 - -0.5
3,301,163 + Dshi_3134 0.12 -1.4
3,301,326 + Dshi_3134 0.26 +0.1
3,301,327 - Dshi_3134 0.27 -1.2
3,301,405 - Dshi_3134 0.33 +0.7
3,301,586 - Dshi_3134 0.49 +0.5
3,301,860 - Dshi_3134 0.73 +1.2
3,301,972 - Dshi_3134 0.83 -0.8

Or see this region's nucleotide sequence