Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3129 and Dshi_3130 overlap by 4 nucleotides Dshi_3130 and Dshi_3131 overlap by 4 nucleotides Dshi_3131 and Dshi_3132 overlap by 1 nucleotides Dshi_3132 and Dshi_3133 are separated by 38 nucleotides Dshi_3133 and Dshi_3134 overlap by 26 nucleotides
Dshi_3129: Dshi_3129 - ABC transporter related (RefSeq), at 3,297,477 to 3,298,550
_3129
Dshi_3130: Dshi_3130 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,298,547 to 3,299,410
_3130
Dshi_3131: Dshi_3131 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,299,407 to 3,300,204
_3131
Dshi_3132: Dshi_3132 - hypothetical protein (RefSeq), at 3,300,204 to 3,300,602
_3132
Dshi_3133: Dshi_3133 - transcriptional repressor, CopY family (RefSeq), at 3,300,641 to 3,301,048
_3133
Dshi_3134: Dshi_3134 - peptidase M56 BlaR1 (RefSeq), at 3,301,023 to 3,302,168
_3134
Position (kb)
3299
3300
3301 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3298.497 kb on + strand at 3298.597 kb on - strand at 3298.666 kb on - strand, within Dshi_3130 at 3298.827 kb on - strand, within Dshi_3130 at 3298.827 kb on - strand, within Dshi_3130 at 3298.908 kb on + strand, within Dshi_3130 at 3299.022 kb on - strand, within Dshi_3130 at 3299.056 kb on + strand, within Dshi_3130 at 3299.099 kb on - strand, within Dshi_3130 at 3299.130 kb on - strand, within Dshi_3130 at 3299.166 kb on - strand, within Dshi_3130 at 3299.244 kb on - strand, within Dshi_3130 at 3299.305 kb on + strand, within Dshi_3130 at 3299.492 kb on - strand, within Dshi_3131 at 3299.534 kb on + strand, within Dshi_3131 at 3299.771 kb on - strand, within Dshi_3131 at 3299.806 kb on + strand, within Dshi_3131 at 3299.842 kb on + strand, within Dshi_3131 at 3299.850 kb on - strand, within Dshi_3131 at 3299.865 kb on - strand, within Dshi_3131 at 3299.902 kb on + strand, within Dshi_3131 at 3300.018 kb on + strand, within Dshi_3131 at 3300.069 kb on - strand, within Dshi_3131 at 3300.165 kb on + strand at 3300.180 kb on + strand at 3300.315 kb on + strand, within Dshi_3132 at 3300.450 kb on + strand, within Dshi_3132 at 3300.457 kb on + strand, within Dshi_3132 at 3300.509 kb on - strand, within Dshi_3132 at 3300.514 kb on - strand, within Dshi_3132 at 3300.569 kb on + strand at 3300.589 kb on + strand at 3300.672 kb on - strand at 3300.708 kb on - strand, within Dshi_3133 at 3300.766 kb on + strand, within Dshi_3133 at 3300.825 kb on + strand, within Dshi_3133 at 3300.855 kb on - strand, within Dshi_3133 at 3300.868 kb on - strand, within Dshi_3133 at 3300.883 kb on + strand, within Dshi_3133 at 3300.936 kb on + strand, within Dshi_3133 at 3300.944 kb on - strand, within Dshi_3133 at 3301.004 kb on + strand, within Dshi_3133 at 3301.023 kb on - strand at 3301.121 kb on + strand at 3301.129 kb on - strand at 3301.136 kb on - strand at 3301.163 kb on + strand, within Dshi_3134
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 3,298,497 + +1.4 3,298,597 - +1.2 3,298,666 - Dshi_3130 0.14 +1.3 3,298,827 - Dshi_3130 0.32 -0.3 3,298,827 - Dshi_3130 0.32 +1.4 3,298,908 + Dshi_3130 0.42 +1.2 3,299,022 - Dshi_3130 0.55 -0.3 3,299,056 + Dshi_3130 0.59 +0.3 3,299,099 - Dshi_3130 0.64 -0.1 3,299,130 - Dshi_3130 0.67 -0.2 3,299,166 - Dshi_3130 0.72 -1.0 3,299,244 - Dshi_3130 0.81 +0.8 3,299,305 + Dshi_3130 0.88 +0.5 3,299,492 - Dshi_3131 0.11 +0.7 3,299,534 + Dshi_3131 0.16 +0.5 3,299,771 - Dshi_3131 0.46 +0.2 3,299,806 + Dshi_3131 0.50 +0.6 3,299,842 + Dshi_3131 0.55 +0.0 3,299,850 - Dshi_3131 0.56 +0.8 3,299,865 - Dshi_3131 0.57 +1.4 3,299,902 + Dshi_3131 0.62 +0.2 3,300,018 + Dshi_3131 0.77 +2.4 3,300,069 - Dshi_3131 0.83 +1.3 3,300,165 + +0.1 3,300,180 + +0.6 3,300,315 + Dshi_3132 0.28 -0.1 3,300,450 + Dshi_3132 0.62 -2.1 3,300,457 + Dshi_3132 0.63 +0.5 3,300,509 - Dshi_3132 0.76 -0.4 3,300,514 - Dshi_3132 0.78 +1.1 3,300,569 + -0.2 3,300,589 + +0.3 3,300,672 - +0.6 3,300,708 - Dshi_3133 0.16 +0.6 3,300,766 + Dshi_3133 0.31 +0.5 3,300,825 + Dshi_3133 0.45 -1.0 3,300,855 - Dshi_3133 0.52 -0.5 3,300,868 - Dshi_3133 0.56 -0.8 3,300,883 + Dshi_3133 0.59 -1.1 3,300,936 + Dshi_3133 0.72 -0.1 3,300,944 - Dshi_3133 0.74 -2.3 3,301,004 + Dshi_3133 0.89 -2.1 3,301,023 - +0.0 3,301,121 + +1.0 3,301,129 - -1.0 3,301,136 - -0.5 3,301,163 + Dshi_3134 0.12 -1.4
Or see this region's nucleotide sequence