Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3118

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3117 and Dshi_3118 overlap by 4 nucleotidesDshi_3118 and Dshi_3119 are separated by 18 nucleotidesDshi_3119 and Dshi_3120 overlap by 4 nucleotides Dshi_3117: Dshi_3117 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,283,557 to 3,285,068 _3117 Dshi_3118: Dshi_3118 - hypothetical protein (RefSeq), at 3,285,065 to 3,286,309 _3118 Dshi_3119: Dshi_3119 - citrate synthase (RefSeq), at 3,286,328 to 3,287,092 _3119 Dshi_3120: Dshi_3120 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 3,287,089 to 3,288,279 _3120 Position (kb) 3285 3286 3287Strain fitness (log2 ratio) -2 -1 0 1 2at 3284.238 kb on + strand, within Dshi_3117at 3284.293 kb on + strand, within Dshi_3117at 3284.326 kb on - strand, within Dshi_3117at 3284.341 kb on - strand, within Dshi_3117at 3284.360 kb on - strand, within Dshi_3117at 3284.383 kb on - strand, within Dshi_3117at 3284.410 kb on - strand, within Dshi_3117at 3284.451 kb on + strand, within Dshi_3117at 3284.534 kb on + strand, within Dshi_3117at 3284.579 kb on + strand, within Dshi_3117at 3284.644 kb on - strand, within Dshi_3117at 3284.677 kb on - strand, within Dshi_3117at 3284.702 kb on + strand, within Dshi_3117at 3284.770 kb on + strand, within Dshi_3117at 3284.817 kb on - strand, within Dshi_3117at 3284.863 kb on - strand, within Dshi_3117at 3284.904 kb on + strand, within Dshi_3117at 3285.258 kb on + strand, within Dshi_3118at 3285.314 kb on + strand, within Dshi_3118at 3285.348 kb on + strand, within Dshi_3118at 3285.392 kb on - strand, within Dshi_3118at 3285.524 kb on - strand, within Dshi_3118at 3285.544 kb on + strand, within Dshi_3118at 3285.598 kb on + strand, within Dshi_3118at 3285.787 kb on - strand, within Dshi_3118at 3285.821 kb on - strand, within Dshi_3118at 3285.872 kb on - strand, within Dshi_3118at 3285.980 kb on - strand, within Dshi_3118at 3286.029 kb on - strand, within Dshi_3118at 3286.044 kb on + strand, within Dshi_3118at 3286.239 kb on - strandat 3286.399 kb on + strandat 3286.455 kb on - strand, within Dshi_3119at 3286.490 kb on - strand, within Dshi_3119at 3286.617 kb on - strand, within Dshi_3119at 3286.617 kb on - strand, within Dshi_3119at 3286.685 kb on - strand, within Dshi_3119at 3286.832 kb on - strand, within Dshi_3119at 3286.840 kb on + strand, within Dshi_3119at 3286.848 kb on - strand, within Dshi_3119at 3286.872 kb on + strand, within Dshi_3119at 3286.902 kb on + strand, within Dshi_3119at 3286.964 kb on - strand, within Dshi_3119at 3287.080 kb on - strandat 3287.112 kb on + strandat 3287.214 kb on - strand, within Dshi_3120at 3287.219 kb on + strand, within Dshi_3120at 3287.219 kb on + strand, within Dshi_3120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,284,238 + Dshi_3117 0.45 +1.1
3,284,293 + Dshi_3117 0.49 -0.3
3,284,326 - Dshi_3117 0.51 +0.5
3,284,341 - Dshi_3117 0.52 +0.4
3,284,360 - Dshi_3117 0.53 +0.5
3,284,383 - Dshi_3117 0.55 +0.0
3,284,410 - Dshi_3117 0.56 +1.7
3,284,451 + Dshi_3117 0.59 +1.8
3,284,534 + Dshi_3117 0.65 -2.3
3,284,579 + Dshi_3117 0.68 +0.5
3,284,644 - Dshi_3117 0.72 -0.0
3,284,677 - Dshi_3117 0.74 +0.3
3,284,702 + Dshi_3117 0.76 -0.4
3,284,770 + Dshi_3117 0.80 -0.3
3,284,817 - Dshi_3117 0.83 -1.9
3,284,863 - Dshi_3117 0.86 -0.5
3,284,904 + Dshi_3117 0.89 -0.3
3,285,258 + Dshi_3118 0.16 -1.7
3,285,314 + Dshi_3118 0.20 -0.9
3,285,348 + Dshi_3118 0.23 +0.0
3,285,392 - Dshi_3118 0.26 -1.1
3,285,524 - Dshi_3118 0.37 +0.1
3,285,544 + Dshi_3118 0.38 -1.7
3,285,598 + Dshi_3118 0.43 -1.0
3,285,787 - Dshi_3118 0.58 +0.1
3,285,821 - Dshi_3118 0.61 -0.3
3,285,872 - Dshi_3118 0.65 +0.9
3,285,980 - Dshi_3118 0.73 -0.7
3,286,029 - Dshi_3118 0.77 +0.0
3,286,044 + Dshi_3118 0.79 -1.3
3,286,239 - -0.2
3,286,399 + +1.0
3,286,455 - Dshi_3119 0.17 -1.3
3,286,490 - Dshi_3119 0.21 -0.9
3,286,617 - Dshi_3119 0.38 +0.1
3,286,617 - Dshi_3119 0.38 +1.1
3,286,685 - Dshi_3119 0.47 +0.1
3,286,832 - Dshi_3119 0.66 +0.6
3,286,840 + Dshi_3119 0.67 +0.1
3,286,848 - Dshi_3119 0.68 -0.7
3,286,872 + Dshi_3119 0.71 +0.3
3,286,902 + Dshi_3119 0.75 -1.4
3,286,964 - Dshi_3119 0.83 +0.4
3,287,080 - +0.7
3,287,112 + +0.6
3,287,214 - Dshi_3120 0.10 -0.4
3,287,219 + Dshi_3120 0.11 +0.7
3,287,219 + Dshi_3120 0.11 -0.2

Or see this region's nucleotide sequence