Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3059 and Dshi_3060 are separated by 78 nucleotides Dshi_3060 and Dshi_3061 are separated by 151 nucleotides Dshi_3061 and Dshi_3062 overlap by 4 nucleotides Dshi_3062 and Dshi_3063 are separated by 34 nucleotides Dshi_3063 and Dshi_3064 overlap by 4 nucleotides
Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926
_3059
Dshi_3060: Dshi_3060 - hypothetical protein (RefSeq), at 3,230,005 to 3,230,340
_3060
Dshi_3061: Dshi_3061 - hypothetical protein (RefSeq), at 3,230,492 to 3,230,662
_3061
Dshi_3062: Dshi_3062 - argininosuccinate lyase (RefSeq), at 3,230,659 to 3,232,050
_3062
Dshi_3063: Dshi_3063 - Redoxin domain protein (RefSeq), at 3,232,085 to 3,232,660
_3063
Dshi_3064: Dshi_3064 - DNA-3-methyladenine glycosylase I (RefSeq), at 3,232,657 to 3,233,226
_3064
Position (kb)
3230
3231
3232
3233 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3230.181 kb on + strand, within Dshi_3060 at 3230.316 kb on + strand at 3230.324 kb on - strand at 3230.478 kb on + strand at 3231.138 kb on - strand, within Dshi_3062 at 3231.212 kb on + strand, within Dshi_3062 at 3231.774 kb on - strand, within Dshi_3062 at 3232.545 kb on - strand, within Dshi_3063 at 3232.609 kb on - strand at 3232.637 kb on + strand at 3232.736 kb on + strand, within Dshi_3064 at 3232.776 kb on + strand, within Dshi_3064 at 3232.902 kb on - strand, within Dshi_3064 at 3233.025 kb on + strand, within Dshi_3064
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 3,230,181 + Dshi_3060 0.52 +1.6 3,230,316 + +0.1 3,230,324 - -1.4 3,230,478 + +1.1 3,231,138 - Dshi_3062 0.34 -1.3 3,231,212 + Dshi_3062 0.40 -1.3 3,231,774 - Dshi_3062 0.80 -2.1 3,232,545 - Dshi_3063 0.80 +5.1 3,232,609 - +2.5 3,232,637 + -0.3 3,232,736 + Dshi_3064 0.14 +0.7 3,232,776 + Dshi_3064 0.21 +0.6 3,232,902 - Dshi_3064 0.43 +0.0 3,233,025 + Dshi_3064 0.65 -0.5
Or see this region's nucleotide sequence