Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2949

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2948 and Dshi_2949 are separated by 354 nucleotidesDshi_2949 and Dshi_2950 are separated by 141 nucleotidesDshi_2950 and Dshi_2951 are separated by 213 nucleotides Dshi_2948: Dshi_2948 - RNA-binding S4 domain protein (RefSeq), at 3,108,054 to 3,108,674 _2948 Dshi_2949: Dshi_2949 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 3,109,029 to 3,111,326 _2949 Dshi_2950: Dshi_2950 - hypothetical protein (RefSeq), at 3,111,468 to 3,111,923 _2950 Dshi_2951: Dshi_2951 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 3,112,137 to 3,113,279 _2951 Position (kb) 3109 3110 3111 3112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3109.187 kb on - strandat 3109.296 kb on - strand, within Dshi_2949at 3109.308 kb on - strand, within Dshi_2949at 3109.627 kb on - strand, within Dshi_2949at 3109.634 kb on + strand, within Dshi_2949at 3109.649 kb on - strand, within Dshi_2949at 3109.714 kb on + strand, within Dshi_2949at 3109.723 kb on + strand, within Dshi_2949at 3109.723 kb on + strand, within Dshi_2949at 3109.731 kb on - strand, within Dshi_2949at 3109.731 kb on - strand, within Dshi_2949at 3109.748 kb on - strand, within Dshi_2949at 3109.818 kb on - strand, within Dshi_2949at 3109.844 kb on - strand, within Dshi_2949at 3110.111 kb on - strand, within Dshi_2949at 3110.137 kb on + strand, within Dshi_2949at 3110.256 kb on + strand, within Dshi_2949at 3110.320 kb on + strand, within Dshi_2949at 3110.458 kb on - strand, within Dshi_2949at 3110.562 kb on + strand, within Dshi_2949at 3110.707 kb on + strand, within Dshi_2949at 3110.731 kb on + strand, within Dshi_2949at 3110.917 kb on - strand, within Dshi_2949at 3110.932 kb on + strand, within Dshi_2949at 3111.162 kb on - strandat 3111.425 kb on + strandat 3111.425 kb on + strandat 3111.554 kb on - strand, within Dshi_2950at 3111.819 kb on - strand, within Dshi_2950at 3111.843 kb on + strand, within Dshi_2950at 3112.125 kb on + strandat 3112.133 kb on - strandat 3112.133 kb on - strandat 3112.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,109,187 - +1.2
3,109,296 - Dshi_2949 0.12 +1.5
3,109,308 - Dshi_2949 0.12 +0.8
3,109,627 - Dshi_2949 0.26 +1.2
3,109,634 + Dshi_2949 0.26 -0.4
3,109,649 - Dshi_2949 0.27 +1.6
3,109,714 + Dshi_2949 0.30 +0.7
3,109,723 + Dshi_2949 0.30 +1.0
3,109,723 + Dshi_2949 0.30 +1.2
3,109,731 - Dshi_2949 0.31 +2.5
3,109,731 - Dshi_2949 0.31 +1.1
3,109,748 - Dshi_2949 0.31 -0.7
3,109,818 - Dshi_2949 0.34 +1.0
3,109,844 - Dshi_2949 0.35 +1.5
3,110,111 - Dshi_2949 0.47 +0.5
3,110,137 + Dshi_2949 0.48 +2.4
3,110,256 + Dshi_2949 0.53 +0.3
3,110,320 + Dshi_2949 0.56 +0.7
3,110,458 - Dshi_2949 0.62 +0.9
3,110,562 + Dshi_2949 0.67 +1.5
3,110,707 + Dshi_2949 0.73 +1.7
3,110,731 + Dshi_2949 0.74 +1.2
3,110,917 - Dshi_2949 0.82 +1.7
3,110,932 + Dshi_2949 0.83 +1.9
3,111,162 - -1.4
3,111,425 + +0.7
3,111,425 + +0.7
3,111,554 - Dshi_2950 0.19 -2.9
3,111,819 - Dshi_2950 0.77 -0.0
3,111,843 + Dshi_2950 0.82 -0.1
3,112,125 + -0.6
3,112,133 - +0.6
3,112,133 - +0.3
3,112,220 - -0.6

Or see this region's nucleotide sequence