Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2931

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2929 and Dshi_2930 overlap by 1 nucleotidesDshi_2930 and Dshi_2931 are separated by 134 nucleotidesDshi_2931 and Dshi_2932 are separated by 9 nucleotidesDshi_2932 and Dshi_2933 are separated by 106 nucleotidesDshi_2933 and Dshi_2934 are separated by 9 nucleotides Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763 _2929 Dshi_2930: Dshi_2930 - DSBA oxidoreductase (RefSeq), at 3,087,763 to 3,088,362 _2930 Dshi_2931: Dshi_2931 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,088,497 to 3,089,519 _2931 Dshi_2932: Dshi_2932 - hypothetical protein (RefSeq), at 3,089,529 to 3,089,879 _2932 Dshi_2933: Dshi_2933 - ATP synthase F1, epsilon subunit (RefSeq), at 3,089,986 to 3,090,381 _2933 Dshi_2934: Dshi_2934 - ATP synthase F1, beta subunit (RefSeq), at 3,090,391 to 3,091,815 _2934 Position (kb) 3088 3089 3090Strain fitness (log2 ratio) -2 -1 0 1at 3087.669 kb on + strand, within Dshi_2929at 3087.731 kb on + strandat 3087.786 kb on + strandat 3087.838 kb on - strand, within Dshi_2930at 3087.900 kb on + strand, within Dshi_2930at 3087.988 kb on - strand, within Dshi_2930at 3088.107 kb on + strand, within Dshi_2930at 3088.115 kb on - strand, within Dshi_2930at 3088.126 kb on - strand, within Dshi_2930at 3088.182 kb on - strand, within Dshi_2930at 3089.535 kb on - strandat 3089.576 kb on + strand, within Dshi_2932at 3089.899 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
remove
3,087,669 + Dshi_2929 0.89 +0.3
3,087,731 + +0.3
3,087,786 + +0.8
3,087,838 - Dshi_2930 0.12 -1.1
3,087,900 + Dshi_2930 0.23 -0.4
3,087,988 - Dshi_2930 0.38 +1.2
3,088,107 + Dshi_2930 0.57 +1.3
3,088,115 - Dshi_2930 0.59 +0.6
3,088,126 - Dshi_2930 0.60 -2.1
3,088,182 - Dshi_2930 0.70 -2.3
3,089,535 - -0.3
3,089,576 + Dshi_2932 0.13 -0.3
3,089,899 - -0.7

Or see this region's nucleotide sequence