Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2909

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2907 and Dshi_2908 are separated by 60 nucleotidesDshi_2908 and Dshi_2909 are separated by 182 nucleotidesDshi_2909 and Dshi_2910 are separated by 63 nucleotidesDshi_2910 and Dshi_2911 are separated by 60 nucleotides Dshi_2907: Dshi_2907 - protein of unknown function DUF1285 (RefSeq), at 3,065,916 to 3,066,521 _2907 Dshi_2908: Dshi_2908 - pseudouridine synthase (RefSeq), at 3,066,582 to 3,067,118 _2908 Dshi_2909: Dshi_2909 - DNA polymerase I (RefSeq), at 3,067,301 to 3,070,099 _2909 Dshi_2910: Dshi_2910 - Hly-III family protein (RefSeq), at 3,070,163 to 3,070,828 _2910 Dshi_2911: Dshi_2911 - hypothetical protein (RefSeq), at 3,070,889 to 3,071,575 _2911 Position (kb) 3067 3068 3069 3070 3071Strain fitness (log2 ratio) -2 -1 0 1 2at 3066.305 kb on - strand, within Dshi_2907at 3066.510 kb on + strandat 3066.581 kb on + strandat 3066.891 kb on + strand, within Dshi_2908at 3066.900 kb on - strand, within Dshi_2908at 3066.986 kb on - strand, within Dshi_2908at 3066.993 kb on + strand, within Dshi_2908at 3067.098 kb on - strandat 3067.148 kb on + strandat 3067.196 kb on - strandat 3067.285 kb on - strandat 3067.319 kb on + strandat 3067.391 kb on - strandat 3067.861 kb on + strand, within Dshi_2909at 3068.361 kb on - strand, within Dshi_2909at 3068.660 kb on - strand, within Dshi_2909at 3068.776 kb on + strand, within Dshi_2909at 3069.219 kb on - strand, within Dshi_2909at 3069.236 kb on - strand, within Dshi_2909at 3070.108 kb on - strandat 3070.119 kb on - strandat 3070.140 kb on - strandat 3070.189 kb on - strandat 3070.212 kb on + strandat 3070.265 kb on + strand, within Dshi_2910at 3070.267 kb on - strand, within Dshi_2910at 3070.280 kb on - strand, within Dshi_2910at 3070.302 kb on + strand, within Dshi_2910at 3070.310 kb on - strand, within Dshi_2910at 3070.324 kb on - strand, within Dshi_2910at 3070.328 kb on - strand, within Dshi_2910at 3070.508 kb on + strand, within Dshi_2910at 3070.528 kb on - strand, within Dshi_2910at 3070.686 kb on + strand, within Dshi_2910at 3070.880 kb on + strandat 3070.957 kb on + strandat 3070.960 kb on - strand, within Dshi_2911at 3070.975 kb on - strand, within Dshi_2911at 3071.015 kb on - strand, within Dshi_2911at 3071.079 kb on - strand, within Dshi_2911at 3071.087 kb on - strand, within Dshi_2911

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,066,305 - Dshi_2907 0.64 +0.4
3,066,510 + +0.7
3,066,581 + -1.3
3,066,891 + Dshi_2908 0.58 -0.7
3,066,900 - Dshi_2908 0.59 -2.1
3,066,986 - Dshi_2908 0.75 +1.2
3,066,993 + Dshi_2908 0.77 -0.7
3,067,098 - -0.4
3,067,148 + -0.4
3,067,196 - +0.3
3,067,285 - -0.1
3,067,319 + +0.1
3,067,391 - +0.0
3,067,861 + Dshi_2909 0.20 -0.3
3,068,361 - Dshi_2909 0.38 +1.3
3,068,660 - Dshi_2909 0.49 -0.1
3,068,776 + Dshi_2909 0.53 +0.8
3,069,219 - Dshi_2909 0.69 +1.3
3,069,236 - Dshi_2909 0.69 +0.3
3,070,108 - +1.2
3,070,119 - -0.0
3,070,140 - +0.5
3,070,189 - +0.2
3,070,212 + +1.2
3,070,265 + Dshi_2910 0.15 -0.2
3,070,267 - Dshi_2910 0.16 -2.3
3,070,280 - Dshi_2910 0.18 -0.1
3,070,302 + Dshi_2910 0.21 +0.5
3,070,310 - Dshi_2910 0.22 +0.5
3,070,324 - Dshi_2910 0.24 -1.4
3,070,328 - Dshi_2910 0.25 -0.4
3,070,508 + Dshi_2910 0.52 -0.8
3,070,528 - Dshi_2910 0.55 +0.0
3,070,686 + Dshi_2910 0.79 -0.4
3,070,880 + +0.8
3,070,957 + +1.2
3,070,960 - Dshi_2911 0.10 +0.7
3,070,975 - Dshi_2911 0.13 +0.1
3,071,015 - Dshi_2911 0.18 +1.9
3,071,079 - Dshi_2911 0.28 -0.5
3,071,087 - Dshi_2911 0.29 +0.9

Or see this region's nucleotide sequence