Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2849

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2847 and Dshi_2848 overlap by 4 nucleotidesDshi_2848 and Dshi_2849 are separated by 130 nucleotidesDshi_2849 and Dshi_2850 overlap by 4 nucleotides Dshi_2847: Dshi_2847 - protein of unknown function DUF81 (RefSeq), at 3,004,600 to 3,005,520 _2847 Dshi_2848: Dshi_2848 - hypothetical protein (RefSeq), at 3,005,517 to 3,006,275 _2848 Dshi_2849: Dshi_2849 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,006,406 to 3,007,137 _2849 Dshi_2850: Dshi_2850 - AAA ATPase (RefSeq), at 3,007,134 to 3,008,669 _2850 Position (kb) 3006 3007 3008Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3005.802 kb on + strand, within Dshi_2848at 3006.045 kb on - strand, within Dshi_2848at 3006.062 kb on - strand, within Dshi_2848at 3006.140 kb on + strand, within Dshi_2848at 3006.172 kb on + strand, within Dshi_2848at 3006.333 kb on + strandat 3006.402 kb on + strandat 3006.472 kb on - strandat 3006.621 kb on + strand, within Dshi_2849at 3006.675 kb on - strand, within Dshi_2849at 3006.890 kb on + strand, within Dshi_2849at 3007.024 kb on - strand, within Dshi_2849at 3007.218 kb on + strandat 3007.297 kb on - strand, within Dshi_2850at 3007.353 kb on + strand, within Dshi_2850at 3007.377 kb on + strand, within Dshi_2850at 3007.400 kb on + strand, within Dshi_2850at 3007.408 kb on - strand, within Dshi_2850at 3007.438 kb on + strand, within Dshi_2850at 3007.582 kb on + strand, within Dshi_2850at 3007.582 kb on + strand, within Dshi_2850at 3007.582 kb on + strand, within Dshi_2850at 3007.590 kb on - strand, within Dshi_2850at 3007.704 kb on - strand, within Dshi_2850at 3007.929 kb on + strand, within Dshi_2850at 3007.970 kb on - strand, within Dshi_2850at 3007.976 kb on + strand, within Dshi_2850at 3008.021 kb on + strandat 3008.101 kb on - strand, within Dshi_2850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,005,802 + Dshi_2848 0.38 +1.6
3,006,045 - Dshi_2848 0.70 +2.3
3,006,062 - Dshi_2848 0.72 +0.9
3,006,140 + Dshi_2848 0.82 +0.6
3,006,172 + Dshi_2848 0.86 +1.0
3,006,333 + +1.6
3,006,402 + -1.6
3,006,472 - +0.7
3,006,621 + Dshi_2849 0.29 -1.1
3,006,675 - Dshi_2849 0.37 +0.0
3,006,890 + Dshi_2849 0.66 -0.2
3,007,024 - Dshi_2849 0.84 -1.0
3,007,218 + +0.0
3,007,297 - Dshi_2850 0.11 +0.7
3,007,353 + Dshi_2850 0.14 +0.7
3,007,377 + Dshi_2850 0.16 +1.0
3,007,400 + Dshi_2850 0.17 +0.2
3,007,408 - Dshi_2850 0.18 +0.3
3,007,438 + Dshi_2850 0.20 +0.5
3,007,582 + Dshi_2850 0.29 +1.1
3,007,582 + Dshi_2850 0.29 +0.3
3,007,582 + Dshi_2850 0.29 +1.1
3,007,590 - Dshi_2850 0.30 +0.3
3,007,704 - Dshi_2850 0.37 -0.7
3,007,929 + Dshi_2850 0.52 +0.3
3,007,970 - Dshi_2850 0.54 -2.8
3,007,976 + Dshi_2850 0.55 +0.2
3,008,021 + +2.0
3,008,101 - Dshi_2850 0.63 +0.5

Or see this region's nucleotide sequence