Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2568

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2567 and Dshi_2568 overlap by 8 nucleotidesDshi_2568 and Dshi_2569 are separated by 8 nucleotides Dshi_2567: Dshi_2567 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,733,766 to 2,736,072 _2567 Dshi_2568: Dshi_2568 - two component transcriptional regulator, LuxR family (RefSeq), at 2,736,065 to 2,736,709 _2568 Dshi_2569: Dshi_2569 - putative ammonia monooxygenase (RefSeq), at 2,736,718 to 2,737,746 _2569 Position (kb) 2736 2737Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2735.069 kb on - strand, within Dshi_2567at 2735.107 kb on - strand, within Dshi_2567at 2735.211 kb on - strand, within Dshi_2567at 2735.308 kb on - strand, within Dshi_2567at 2735.329 kb on + strand, within Dshi_2567at 2735.337 kb on - strand, within Dshi_2567at 2735.337 kb on - strand, within Dshi_2567at 2735.342 kb on - strand, within Dshi_2567at 2735.362 kb on + strand, within Dshi_2567at 2735.370 kb on - strand, within Dshi_2567at 2735.447 kb on + strand, within Dshi_2567at 2735.604 kb on + strand, within Dshi_2567at 2735.670 kb on + strand, within Dshi_2567at 2735.680 kb on + strand, within Dshi_2567at 2735.714 kb on - strand, within Dshi_2567at 2735.714 kb on - strand, within Dshi_2567at 2735.720 kb on - strand, within Dshi_2567at 2735.793 kb on - strand, within Dshi_2567at 2735.800 kb on + strand, within Dshi_2567at 2735.808 kb on - strand, within Dshi_2567at 2735.889 kb on - strandat 2735.966 kb on + strandat 2735.966 kb on + strandat 2735.966 kb on + strandat 2735.966 kb on + strandat 2735.966 kb on + strandat 2735.966 kb on + strandat 2735.974 kb on - strandat 2736.027 kb on - strandat 2736.131 kb on - strand, within Dshi_2568at 2736.136 kb on + strand, within Dshi_2568at 2736.143 kb on + strand, within Dshi_2568at 2736.218 kb on + strand, within Dshi_2568at 2736.218 kb on + strand, within Dshi_2568at 2736.226 kb on - strand, within Dshi_2568at 2736.226 kb on - strand, within Dshi_2568at 2736.226 kb on - strand, within Dshi_2568at 2736.226 kb on - strand, within Dshi_2568at 2736.503 kb on - strand, within Dshi_2568at 2736.672 kb on - strandat 2736.691 kb on + strandat 2736.691 kb on + strandat 2736.691 kb on + strandat 2736.699 kb on - strandat 2736.699 kb on - strandat 2736.699 kb on - strandat 2736.709 kb on + strandat 2736.711 kb on + strandat 2736.789 kb on + strandat 2736.811 kb on + strandat 2736.819 kb on - strandat 2736.905 kb on - strand, within Dshi_2569at 2737.092 kb on - strand, within Dshi_2569at 2737.155 kb on - strand, within Dshi_2569at 2737.260 kb on - strand, within Dshi_2569at 2737.273 kb on - strand, within Dshi_2569at 2737.282 kb on - strand, within Dshi_2569at 2737.340 kb on - strand, within Dshi_2569at 2737.383 kb on + strand, within Dshi_2569at 2737.391 kb on - strand, within Dshi_2569at 2737.423 kb on - strand, within Dshi_2569at 2737.434 kb on + strand, within Dshi_2569at 2737.447 kb on + strand, within Dshi_2569at 2737.457 kb on + strand, within Dshi_2569at 2737.465 kb on - strand, within Dshi_2569at 2737.511 kb on - strand, within Dshi_2569at 2737.567 kb on + strand, within Dshi_2569at 2737.599 kb on + strand, within Dshi_2569at 2737.659 kb on - strandat 2737.664 kb on + strandat 2737.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,735,069 - Dshi_2567 0.56 +0.1
2,735,107 - Dshi_2567 0.58 +1.1
2,735,211 - Dshi_2567 0.63 -2.1
2,735,308 - Dshi_2567 0.67 -0.2
2,735,329 + Dshi_2567 0.68 -0.8
2,735,337 - Dshi_2567 0.68 -1.4
2,735,337 - Dshi_2567 0.68 -0.9
2,735,342 - Dshi_2567 0.68 -0.5
2,735,362 + Dshi_2567 0.69 +0.3
2,735,370 - Dshi_2567 0.70 -1.0
2,735,447 + Dshi_2567 0.73 +2.9
2,735,604 + Dshi_2567 0.80 -0.6
2,735,670 + Dshi_2567 0.83 -1.3
2,735,680 + Dshi_2567 0.83 -0.9
2,735,714 - Dshi_2567 0.84 -0.4
2,735,714 - Dshi_2567 0.84 -0.1
2,735,720 - Dshi_2567 0.85 +0.9
2,735,793 - Dshi_2567 0.88 +1.3
2,735,800 + Dshi_2567 0.88 +0.8
2,735,808 - Dshi_2567 0.89 +0.3
2,735,889 - +0.6
2,735,966 + +0.8
2,735,966 + -2.1
2,735,966 + -0.8
2,735,966 + -0.7
2,735,966 + +0.2
2,735,966 + +0.3
2,735,974 - +0.1
2,736,027 - -0.7
2,736,131 - Dshi_2568 0.10 -1.9
2,736,136 + Dshi_2568 0.11 +1.1
2,736,143 + Dshi_2568 0.12 -0.6
2,736,218 + Dshi_2568 0.24 +0.1
2,736,218 + Dshi_2568 0.24 -0.4
2,736,226 - Dshi_2568 0.25 -0.9
2,736,226 - Dshi_2568 0.25 -1.3
2,736,226 - Dshi_2568 0.25 -0.9
2,736,226 - Dshi_2568 0.25 -0.9
2,736,503 - Dshi_2568 0.68 -0.8
2,736,672 - +0.7
2,736,691 + +0.8
2,736,691 + -0.6
2,736,691 + +0.0
2,736,699 - -0.3
2,736,699 - -1.4
2,736,699 - -0.9
2,736,709 + +2.3
2,736,711 + -0.2
2,736,789 + +0.1
2,736,811 + -1.3
2,736,819 - +0.5
2,736,905 - Dshi_2569 0.18 -0.5
2,737,092 - Dshi_2569 0.36 +0.5
2,737,155 - Dshi_2569 0.42 +1.6
2,737,260 - Dshi_2569 0.53 +0.5
2,737,273 - Dshi_2569 0.54 +1.5
2,737,282 - Dshi_2569 0.55 +0.4
2,737,340 - Dshi_2569 0.60 +1.1
2,737,383 + Dshi_2569 0.65 -0.2
2,737,391 - Dshi_2569 0.65 -0.3
2,737,423 - Dshi_2569 0.69 -0.1
2,737,434 + Dshi_2569 0.70 +0.2
2,737,447 + Dshi_2569 0.71 +0.3
2,737,457 + Dshi_2569 0.72 -0.4
2,737,465 - Dshi_2569 0.73 -0.3
2,737,511 - Dshi_2569 0.77 +1.7
2,737,567 + Dshi_2569 0.83 +0.4
2,737,599 + Dshi_2569 0.86 -0.3
2,737,659 - -0.4
2,737,664 + +0.5
2,737,672 - +0.2

Or see this region's nucleotide sequence