Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2387

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2385 and Dshi_2386 are separated by 71 nucleotidesDshi_2386 and Dshi_2387 are separated by 166 nucleotidesDshi_2387 and Dshi_2388 are separated by 79 nucleotides Dshi_2385: Dshi_2385 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,519,748 to 2,520,101 _2385 Dshi_2386: Dshi_2386 - GatB/YqeY (RefSeq), at 2,520,173 to 2,520,634 _2386 Dshi_2387: Dshi_2387 - carbamoyl-phosphate synthase, small subunit (RefSeq), at 2,520,801 to 2,521,970 _2387 Dshi_2388: Dshi_2388 - glycosyl transferase family 2 (RefSeq), at 2,522,050 to 2,523,957 _2388 Position (kb) 2520 2521 2522Strain fitness (log2 ratio) -2 -1 0 1 2at 2519.867 kb on - strand, within Dshi_2385at 2520.706 kb on + strandat 2522.410 kb on - strand, within Dshi_2388at 2522.430 kb on + strand, within Dshi_2388at 2522.552 kb on + strand, within Dshi_2388at 2522.603 kb on + strand, within Dshi_2388at 2522.653 kb on - strand, within Dshi_2388at 2522.749 kb on - strand, within Dshi_2388at 2522.851 kb on + strand, within Dshi_2388at 2522.920 kb on - strand, within Dshi_2388at 2522.949 kb on + strand, within Dshi_2388

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,519,867 - Dshi_2385 0.34 +0.2
2,520,706 + -0.0
2,522,410 - Dshi_2388 0.19 +0.8
2,522,430 + Dshi_2388 0.20 -0.2
2,522,552 + Dshi_2388 0.26 +0.3
2,522,603 + Dshi_2388 0.29 -0.2
2,522,653 - Dshi_2388 0.32 -0.2
2,522,749 - Dshi_2388 0.37 +1.8
2,522,851 + Dshi_2388 0.42 -2.4
2,522,920 - Dshi_2388 0.46 +1.5
2,522,949 + Dshi_2388 0.47 +0.3

Or see this region's nucleotide sequence