Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2373

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2372 and Dshi_2373 are separated by 230 nucleotidesDshi_2373 and Dshi_2374 are separated by 287 nucleotides Dshi_2372: Dshi_2372 - orotate phosphoribosyltransferase (RefSeq), at 2,504,743 to 2,505,423 _2372 Dshi_2373: Dshi_2373 - replicative DNA helicase (RefSeq), at 2,505,654 to 2,507,174 _2373 Dshi_2374: Dshi_2374 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,507,462 to 2,508,685 _2374 Position (kb) 2505 2506 2507 2508Strain fitness (log2 ratio) -2 -1 0 1 2at 2504.693 kb on - strandat 2504.714 kb on - strandat 2504.789 kb on + strandat 2504.797 kb on - strandat 2504.857 kb on + strand, within Dshi_2372at 2504.870 kb on - strand, within Dshi_2372at 2504.893 kb on - strand, within Dshi_2372at 2505.096 kb on + strand, within Dshi_2372at 2505.104 kb on - strand, within Dshi_2372at 2505.142 kb on + strand, within Dshi_2372at 2505.294 kb on + strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372at 2507.318 kb on - strandat 2507.369 kb on + strandat 2507.379 kb on + strandat 2507.404 kb on + strandat 2507.580 kb on - strandat 2507.623 kb on + strand, within Dshi_2374at 2507.713 kb on - strand, within Dshi_2374at 2507.748 kb on - strand, within Dshi_2374at 2507.768 kb on - strand, within Dshi_2374at 2507.843 kb on - strand, within Dshi_2374at 2507.906 kb on - strand, within Dshi_2374at 2508.092 kb on + strand, within Dshi_2374at 2508.114 kb on + strand, within Dshi_2374

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,504,693 - +0.5
2,504,714 - +0.0
2,504,789 + -0.5
2,504,797 - -0.3
2,504,857 + Dshi_2372 0.17 +0.4
2,504,870 - Dshi_2372 0.19 -0.6
2,504,893 - Dshi_2372 0.22 +0.5
2,505,096 + Dshi_2372 0.52 +0.1
2,505,104 - Dshi_2372 0.53 +0.9
2,505,142 + Dshi_2372 0.59 +0.2
2,505,294 + Dshi_2372 0.81 +0.9
2,505,302 - Dshi_2372 0.82 +0.7
2,505,302 - Dshi_2372 0.82 -0.1
2,507,318 - +0.8
2,507,369 + -2.7
2,507,379 + +1.1
2,507,404 + -1.0
2,507,580 - +0.5
2,507,623 + Dshi_2374 0.13 +2.4
2,507,713 - Dshi_2374 0.21 +0.4
2,507,748 - Dshi_2374 0.23 +0.4
2,507,768 - Dshi_2374 0.25 +0.0
2,507,843 - Dshi_2374 0.31 +0.1
2,507,906 - Dshi_2374 0.36 +0.6
2,508,092 + Dshi_2374 0.51 +0.1
2,508,114 + Dshi_2374 0.53 -0.9

Or see this region's nucleotide sequence