Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2372

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2371 and Dshi_2372 are separated by 139 nucleotidesDshi_2372 and Dshi_2373 are separated by 230 nucleotides Dshi_2371: Dshi_2371 - dihydroorotase, homodimeric type (RefSeq), at 2,503,566 to 2,504,603 _2371 Dshi_2372: Dshi_2372 - orotate phosphoribosyltransferase (RefSeq), at 2,504,743 to 2,505,423 _2372 Dshi_2373: Dshi_2373 - replicative DNA helicase (RefSeq), at 2,505,654 to 2,507,174 _2373 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -1 0 1 2at 2503.759 kb on - strand, within Dshi_2371at 2503.795 kb on - strand, within Dshi_2371at 2503.859 kb on + strand, within Dshi_2371at 2503.955 kb on + strand, within Dshi_2371at 2504.039 kb on - strand, within Dshi_2371at 2504.056 kb on + strand, within Dshi_2371at 2504.114 kb on + strand, within Dshi_2371at 2504.143 kb on + strand, within Dshi_2371at 2504.213 kb on - strand, within Dshi_2371at 2504.225 kb on + strand, within Dshi_2371at 2504.432 kb on - strand, within Dshi_2371at 2504.509 kb on + strandat 2504.524 kb on - strandat 2504.559 kb on - strandat 2504.693 kb on - strandat 2504.714 kb on - strandat 2504.789 kb on + strandat 2504.797 kb on - strandat 2504.857 kb on + strand, within Dshi_2372at 2504.870 kb on - strand, within Dshi_2372at 2504.893 kb on - strand, within Dshi_2372at 2505.096 kb on + strand, within Dshi_2372at 2505.104 kb on - strand, within Dshi_2372at 2505.142 kb on + strand, within Dshi_2372at 2505.294 kb on + strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,503,759 - Dshi_2371 0.19 +0.3
2,503,795 - Dshi_2371 0.22 +0.8
2,503,859 + Dshi_2371 0.28 +0.3
2,503,955 + Dshi_2371 0.37 +1.7
2,504,039 - Dshi_2371 0.46 +1.4
2,504,056 + Dshi_2371 0.47 +1.5
2,504,114 + Dshi_2371 0.53 +0.2
2,504,143 + Dshi_2371 0.56 +0.1
2,504,213 - Dshi_2371 0.62 +0.0
2,504,225 + Dshi_2371 0.63 +0.2
2,504,432 - Dshi_2371 0.83 +1.3
2,504,509 + +2.4
2,504,524 - +1.2
2,504,559 - +0.6
2,504,693 - +0.5
2,504,714 - +0.0
2,504,789 + -0.5
2,504,797 - -0.3
2,504,857 + Dshi_2372 0.17 +0.4
2,504,870 - Dshi_2372 0.19 -0.6
2,504,893 - Dshi_2372 0.22 +0.5
2,505,096 + Dshi_2372 0.52 +0.1
2,505,104 - Dshi_2372 0.53 +0.9
2,505,142 + Dshi_2372 0.59 +0.2
2,505,294 + Dshi_2372 0.81 +0.9
2,505,302 - Dshi_2372 0.82 +0.7
2,505,302 - Dshi_2372 0.82 -0.1

Or see this region's nucleotide sequence