Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2325

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2323 and Dshi_2324 are separated by 90 nucleotidesDshi_2324 and Dshi_2325 are separated by 95 nucleotidesDshi_2325 and Dshi_2326 are separated by 41 nucleotides Dshi_2323: Dshi_2323 - hypothetical protein (RefSeq), at 2,454,501 to 2,455,259 _2323 Dshi_2324: Dshi_2324 - regulatory protein GntR HTH (RefSeq), at 2,455,350 to 2,456,078 _2324 Dshi_2325: Dshi_2325 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (RefSeq), at 2,456,174 to 2,457,220 _2325 Dshi_2326: Dshi_2326 - hypothetical protein (RefSeq), at 2,457,262 to 2,457,699 _2326 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -3 -2 -1 0 1at 2455.260 kb on - strandat 2455.260 kb on - strandat 2455.263 kb on - strandat 2455.263 kb on - strandat 2455.346 kb on - strandat 2455.371 kb on + strandat 2455.411 kb on - strandat 2455.418 kb on + strandat 2455.527 kb on + strand, within Dshi_2324at 2455.563 kb on + strand, within Dshi_2324at 2455.596 kb on - strand, within Dshi_2324at 2455.635 kb on - strand, within Dshi_2324at 2455.635 kb on - strand, within Dshi_2324at 2455.689 kb on + strand, within Dshi_2324at 2455.694 kb on + strand, within Dshi_2324at 2455.816 kb on + strand, within Dshi_2324at 2455.817 kb on - strand, within Dshi_2324at 2455.840 kb on - strand, within Dshi_2324at 2455.869 kb on - strand, within Dshi_2324at 2455.972 kb on + strand, within Dshi_2324at 2456.006 kb on + strandat 2456.009 kb on - strandat 2456.046 kb on + strandat 2456.091 kb on - strandat 2456.125 kb on + strandat 2456.183 kb on + strandat 2456.266 kb on - strandat 2456.298 kb on + strand, within Dshi_2325at 2456.314 kb on - strand, within Dshi_2325at 2456.352 kb on + strand, within Dshi_2325at 2456.399 kb on + strand, within Dshi_2325at 2456.446 kb on + strand, within Dshi_2325at 2456.489 kb on - strand, within Dshi_2325at 2456.496 kb on - strand, within Dshi_2325at 2456.501 kb on - strand, within Dshi_2325at 2456.650 kb on + strand, within Dshi_2325at 2456.662 kb on + strand, within Dshi_2325at 2456.765 kb on - strand, within Dshi_2325at 2456.832 kb on - strand, within Dshi_2325at 2456.832 kb on - strand, within Dshi_2325at 2456.843 kb on + strand, within Dshi_2325at 2456.899 kb on + strand, within Dshi_2325at 2456.924 kb on + strand, within Dshi_2325at 2456.929 kb on - strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.971 kb on + strand, within Dshi_2325at 2456.972 kb on + strand, within Dshi_2325at 2456.972 kb on + strand, within Dshi_2325at 2456.980 kb on - strand, within Dshi_2325at 2457.026 kb on + strand, within Dshi_2325at 2457.026 kb on + strand, within Dshi_2325at 2457.031 kb on + strand, within Dshi_2325at 2457.053 kb on + strand, within Dshi_2325at 2457.096 kb on - strand, within Dshi_2325at 2457.106 kb on + strand, within Dshi_2325at 2457.162 kb on - strandat 2457.202 kb on + strandat 2457.265 kb on + strandat 2457.273 kb on - strandat 2457.347 kb on - strand, within Dshi_2326at 2457.381 kb on + strand, within Dshi_2326at 2457.381 kb on + strand, within Dshi_2326at 2457.386 kb on + strand, within Dshi_2326at 2457.386 kb on + strand, within Dshi_2326at 2457.389 kb on - strand, within Dshi_2326at 2457.389 kb on - strand, within Dshi_2326at 2457.394 kb on - strand, within Dshi_2326at 2457.436 kb on - strand, within Dshi_2326at 2457.512 kb on + strand, within Dshi_2326at 2457.519 kb on - strand, within Dshi_2326at 2457.532 kb on - strand, within Dshi_2326at 2457.542 kb on - strand, within Dshi_2326at 2457.586 kb on + strand, within Dshi_2326at 2457.638 kb on + strand, within Dshi_2326at 2457.693 kb on + strandat 2457.693 kb on + strandat 2457.693 kb on + strandat 2457.699 kb on + strandat 2457.701 kb on - strandat 2457.702 kb on - strandat 2457.711 kb on - strandat 2457.767 kb on + strandat 2458.114 kb on + strandat 2458.114 kb on + strandat 2458.117 kb on - strandat 2458.141 kb on + strandat 2458.149 kb on - strandat 2458.194 kb on + strandat 2458.209 kb on - strandat 2458.211 kb on - strandat 2458.213 kb on + strandat 2458.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,455,260 - +1.3
2,455,260 - -0.2
2,455,263 - +0.1
2,455,263 - +0.3
2,455,346 - -0.0
2,455,371 + -0.3
2,455,411 - -2.4
2,455,418 + -0.7
2,455,527 + Dshi_2324 0.24 -1.6
2,455,563 + Dshi_2324 0.29 -1.9
2,455,596 - Dshi_2324 0.34 -1.8
2,455,635 - Dshi_2324 0.39 -1.8
2,455,635 - Dshi_2324 0.39 -1.3
2,455,689 + Dshi_2324 0.47 -1.8
2,455,694 + Dshi_2324 0.47 +1.0
2,455,816 + Dshi_2324 0.64 -2.3
2,455,817 - Dshi_2324 0.64 -2.8
2,455,840 - Dshi_2324 0.67 -1.0
2,455,869 - Dshi_2324 0.71 -2.1
2,455,972 + Dshi_2324 0.85 -2.7
2,456,006 + -1.2
2,456,009 - -1.5
2,456,046 + -1.5
2,456,091 - +1.2
2,456,125 + +0.5
2,456,183 + -0.0
2,456,266 - +0.5
2,456,298 + Dshi_2325 0.12 +1.6
2,456,314 - Dshi_2325 0.13 +0.3
2,456,352 + Dshi_2325 0.17 +1.0
2,456,399 + Dshi_2325 0.21 -2.2
2,456,446 + Dshi_2325 0.26 +0.1
2,456,489 - Dshi_2325 0.30 +0.6
2,456,496 - Dshi_2325 0.31 +1.1
2,456,501 - Dshi_2325 0.31 +1.7
2,456,650 + Dshi_2325 0.45 +0.8
2,456,662 + Dshi_2325 0.47 -0.0
2,456,765 - Dshi_2325 0.56 +0.3
2,456,832 - Dshi_2325 0.63 -0.7
2,456,832 - Dshi_2325 0.63 -0.1
2,456,843 + Dshi_2325 0.64 +1.7
2,456,899 + Dshi_2325 0.69 +0.8
2,456,924 + Dshi_2325 0.72 -0.2
2,456,929 - Dshi_2325 0.72 +1.0
2,456,937 + Dshi_2325 0.73 +0.3
2,456,937 + Dshi_2325 0.73 +0.0
2,456,937 + Dshi_2325 0.73 +0.3
2,456,937 + Dshi_2325 0.73 +1.2
2,456,945 - Dshi_2325 0.74 +0.7
2,456,945 - Dshi_2325 0.74 +0.2
2,456,945 - Dshi_2325 0.74 +0.8
2,456,945 - Dshi_2325 0.74 +1.0
2,456,945 - Dshi_2325 0.74 +0.6
2,456,945 - Dshi_2325 0.74 +0.6
2,456,971 + Dshi_2325 0.76 +0.1
2,456,972 + Dshi_2325 0.76 +0.7
2,456,972 + Dshi_2325 0.76 -0.1
2,456,980 - Dshi_2325 0.77 +1.1
2,457,026 + Dshi_2325 0.81 +0.1
2,457,026 + Dshi_2325 0.81 +1.0
2,457,031 + Dshi_2325 0.82 -0.2
2,457,053 + Dshi_2325 0.84 +0.4
2,457,096 - Dshi_2325 0.88 -2.3
2,457,106 + Dshi_2325 0.89 -0.1
2,457,162 - -0.1
2,457,202 + -0.4
2,457,265 + -0.0
2,457,273 - +0.2
2,457,347 - Dshi_2326 0.19 +0.3
2,457,381 + Dshi_2326 0.27 -0.1
2,457,381 + Dshi_2326 0.27 +0.7
2,457,386 + Dshi_2326 0.28 -0.8
2,457,386 + Dshi_2326 0.28 +0.2
2,457,389 - Dshi_2326 0.29 +0.6
2,457,389 - Dshi_2326 0.29 -0.6
2,457,394 - Dshi_2326 0.30 -0.5
2,457,436 - Dshi_2326 0.40 -0.3
2,457,512 + Dshi_2326 0.57 +1.0
2,457,519 - Dshi_2326 0.59 -0.2
2,457,532 - Dshi_2326 0.62 +0.5
2,457,542 - Dshi_2326 0.64 -0.3
2,457,586 + Dshi_2326 0.74 -1.0
2,457,638 + Dshi_2326 0.86 +0.2
2,457,693 + +1.0
2,457,693 + +0.4
2,457,693 + +0.7
2,457,699 + +0.5
2,457,701 - -0.1
2,457,702 - +0.6
2,457,711 - +0.7
2,457,767 + -0.8
2,458,114 + +0.4
2,458,114 + +1.4
2,458,117 - -0.0
2,458,141 + +0.6
2,458,149 - -0.4
2,458,194 + +1.0
2,458,209 - +0.9
2,458,211 - -0.9
2,458,213 + -0.5
2,458,213 + -0.8

Or see this region's nucleotide sequence