Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2317

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2315 and Dshi_2316 are separated by 13 nucleotidesDshi_2316 and Dshi_2317 are separated by 19 nucleotidesDshi_2317 and Dshi_2318 are separated by 98 nucleotides Dshi_2315: Dshi_2315 - NUDIX hydrolase (RefSeq), at 2,446,520 to 2,447,656 _2315 Dshi_2316: Dshi_2316 - hypothetical protein (RefSeq), at 2,447,670 to 2,448,110 _2316 Dshi_2317: Dshi_2317 - Cyclopropane-fatty-acyl-phospholipid synthase (RefSeq), at 2,448,130 to 2,449,374 _2317 Dshi_2318: Dshi_2318 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 2,449,473 to 2,450,903 _2318 Position (kb) 2448 2449 2450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2447.159 kb on - strand, within Dshi_2315at 2447.307 kb on - strand, within Dshi_2315at 2447.323 kb on - strand, within Dshi_2315at 2447.333 kb on - strand, within Dshi_2315at 2447.476 kb on + strand, within Dshi_2315at 2447.503 kb on - strand, within Dshi_2315at 2447.658 kb on + strandat 2447.668 kb on + strandat 2447.811 kb on - strand, within Dshi_2316at 2447.821 kb on - strand, within Dshi_2316at 2447.845 kb on - strand, within Dshi_2316at 2447.871 kb on - strand, within Dshi_2316at 2447.899 kb on - strand, within Dshi_2316at 2448.003 kb on + strand, within Dshi_2316at 2448.029 kb on + strand, within Dshi_2316at 2448.116 kb on + strandat 2448.116 kb on + strandat 2448.129 kb on - strandat 2448.135 kb on - strandat 2448.146 kb on + strandat 2448.169 kb on - strandat 2448.340 kb on + strand, within Dshi_2317at 2448.475 kb on - strand, within Dshi_2317at 2448.533 kb on + strand, within Dshi_2317at 2448.533 kb on + strand, within Dshi_2317at 2448.533 kb on + strand, within Dshi_2317at 2448.533 kb on + strand, within Dshi_2317at 2448.541 kb on - strand, within Dshi_2317at 2448.591 kb on + strand, within Dshi_2317at 2448.593 kb on - strand, within Dshi_2317at 2448.710 kb on - strand, within Dshi_2317at 2448.842 kb on + strand, within Dshi_2317at 2448.847 kb on + strand, within Dshi_2317at 2448.855 kb on - strand, within Dshi_2317at 2448.857 kb on + strand, within Dshi_2317at 2448.896 kb on + strand, within Dshi_2317at 2448.905 kb on + strand, within Dshi_2317at 2448.924 kb on + strand, within Dshi_2317at 2448.960 kb on - strand, within Dshi_2317at 2448.961 kb on - strand, within Dshi_2317at 2449.009 kb on - strand, within Dshi_2317at 2449.011 kb on + strand, within Dshi_2317at 2449.011 kb on + strand, within Dshi_2317at 2449.019 kb on - strand, within Dshi_2317at 2449.073 kb on + strand, within Dshi_2317at 2449.080 kb on + strand, within Dshi_2317at 2449.080 kb on + strand, within Dshi_2317at 2449.196 kb on + strand, within Dshi_2317at 2449.226 kb on + strand, within Dshi_2317at 2449.307 kb on + strandat 2449.349 kb on + strandat 2449.389 kb on - strandat 2449.397 kb on + strandat 2449.405 kb on - strandat 2449.510 kb on - strandat 2449.553 kb on + strandat 2449.571 kb on + strandat 2449.626 kb on + strand, within Dshi_2318at 2449.629 kb on - strand, within Dshi_2318at 2449.658 kb on - strand, within Dshi_2318at 2449.662 kb on - strand, within Dshi_2318at 2449.668 kb on - strand, within Dshi_2318at 2449.729 kb on + strand, within Dshi_2318at 2449.770 kb on - strand, within Dshi_2318at 2449.828 kb on + strand, within Dshi_2318at 2449.847 kb on + strand, within Dshi_2318at 2449.847 kb on + strand, within Dshi_2318at 2449.943 kb on + strand, within Dshi_2318at 2449.961 kb on - strand, within Dshi_2318at 2450.100 kb on - strand, within Dshi_2318at 2450.103 kb on + strand, within Dshi_2318at 2450.106 kb on - strand, within Dshi_2318at 2450.139 kb on + strand, within Dshi_2318at 2450.164 kb on - strand, within Dshi_2318at 2450.188 kb on - strand, within Dshi_2318at 2450.319 kb on + strand, within Dshi_2318

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,447,159 - Dshi_2315 0.56 +0.3
2,447,307 - Dshi_2315 0.69 +1.8
2,447,323 - Dshi_2315 0.71 -2.7
2,447,333 - Dshi_2315 0.72 +0.2
2,447,476 + Dshi_2315 0.84 -0.6
2,447,503 - Dshi_2315 0.86 +1.1
2,447,658 + -0.9
2,447,668 + -1.4
2,447,811 - Dshi_2316 0.32 +0.0
2,447,821 - Dshi_2316 0.34 +0.4
2,447,845 - Dshi_2316 0.40 +0.2
2,447,871 - Dshi_2316 0.46 -0.3
2,447,899 - Dshi_2316 0.52 -0.2
2,448,003 + Dshi_2316 0.76 -0.0
2,448,029 + Dshi_2316 0.81 +1.0
2,448,116 + -0.1
2,448,116 + +0.2
2,448,129 - -1.5
2,448,135 - -0.6
2,448,146 + -1.0
2,448,169 - +1.1
2,448,340 + Dshi_2317 0.17 -1.6
2,448,475 - Dshi_2317 0.28 -0.4
2,448,533 + Dshi_2317 0.32 -0.1
2,448,533 + Dshi_2317 0.32 -0.6
2,448,533 + Dshi_2317 0.32 -0.2
2,448,533 + Dshi_2317 0.32 -3.0
2,448,541 - Dshi_2317 0.33 -0.2
2,448,591 + Dshi_2317 0.37 +0.6
2,448,593 - Dshi_2317 0.37 -0.4
2,448,710 - Dshi_2317 0.47 -1.6
2,448,842 + Dshi_2317 0.57 +2.8
2,448,847 + Dshi_2317 0.58 +0.3
2,448,855 - Dshi_2317 0.58 -0.6
2,448,857 + Dshi_2317 0.58 -2.5
2,448,896 + Dshi_2317 0.62 -0.0
2,448,905 + Dshi_2317 0.62 -0.9
2,448,924 + Dshi_2317 0.64 -0.0
2,448,960 - Dshi_2317 0.67 -1.0
2,448,961 - Dshi_2317 0.67 +0.1
2,449,009 - Dshi_2317 0.71 -0.6
2,449,011 + Dshi_2317 0.71 -0.3
2,449,011 + Dshi_2317 0.71 -0.8
2,449,019 - Dshi_2317 0.71 -0.0
2,449,073 + Dshi_2317 0.76 -2.2
2,449,080 + Dshi_2317 0.76 -2.1
2,449,080 + Dshi_2317 0.76 -0.0
2,449,196 + Dshi_2317 0.86 -1.6
2,449,226 + Dshi_2317 0.88 -0.9
2,449,307 + +0.4
2,449,349 + -0.8
2,449,389 - +1.0
2,449,397 + +0.1
2,449,405 - -0.9
2,449,510 - -0.2
2,449,553 + +0.6
2,449,571 + +0.4
2,449,626 + Dshi_2318 0.11 -1.5
2,449,629 - Dshi_2318 0.11 +0.5
2,449,658 - Dshi_2318 0.13 -0.0
2,449,662 - Dshi_2318 0.13 +1.1
2,449,668 - Dshi_2318 0.14 +0.3
2,449,729 + Dshi_2318 0.18 -0.4
2,449,770 - Dshi_2318 0.21 +0.4
2,449,828 + Dshi_2318 0.25 -2.5
2,449,847 + Dshi_2318 0.26 +1.1
2,449,847 + Dshi_2318 0.26 +0.2
2,449,943 + Dshi_2318 0.33 -0.2
2,449,961 - Dshi_2318 0.34 +0.8
2,450,100 - Dshi_2318 0.44 +0.7
2,450,103 + Dshi_2318 0.44 -0.7
2,450,106 - Dshi_2318 0.44 +0.1
2,450,139 + Dshi_2318 0.47 +1.2
2,450,164 - Dshi_2318 0.48 +0.6
2,450,188 - Dshi_2318 0.50 +0.3
2,450,319 + Dshi_2318 0.59 -0.1

Or see this region's nucleotide sequence