Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2302

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2300 and Dshi_2301 overlap by 11 nucleotidesDshi_2301 and Dshi_2302 are separated by 406 nucleotidesDshi_2302 and Dshi_2303 are separated by 21 nucleotides Dshi_2300: Dshi_2300 - hypothetical protein (RefSeq), at 2,431,492 to 2,432,319 _2300 Dshi_2301: Dshi_2301 - hypothetical protein (RefSeq), at 2,432,309 to 2,432,662 _2301 Dshi_2302: Dshi_2302 - hypothetical protein (RefSeq), at 2,433,069 to 2,433,371 _2302 Dshi_2303: Dshi_2303 - NnrS family protein (RefSeq), at 2,433,393 to 2,434,691 _2303 Position (kb) 2433 2434Strain fitness (log2 ratio) -2 -1 0 1 2at 2432.085 kb on + strand, within Dshi_2300at 2432.085 kb on + strand, within Dshi_2300at 2432.103 kb on - strand, within Dshi_2300at 2432.109 kb on + strand, within Dshi_2300at 2432.109 kb on + strand, within Dshi_2300at 2432.147 kb on - strand, within Dshi_2300at 2432.159 kb on + strand, within Dshi_2300at 2432.166 kb on - strand, within Dshi_2300at 2432.168 kb on + strand, within Dshi_2300at 2432.176 kb on - strand, within Dshi_2300at 2432.178 kb on + strand, within Dshi_2300at 2432.183 kb on + strand, within Dshi_2300at 2432.195 kb on + strand, within Dshi_2300at 2432.195 kb on + strand, within Dshi_2300at 2432.195 kb on + strand, within Dshi_2300at 2432.207 kb on + strand, within Dshi_2300at 2432.213 kb on - strand, within Dshi_2300at 2432.213 kb on - strand, within Dshi_2300at 2432.215 kb on + strand, within Dshi_2300at 2432.225 kb on + strand, within Dshi_2300at 2432.233 kb on - strand, within Dshi_2300at 2432.233 kb on - strand, within Dshi_2300at 2432.372 kb on - strand, within Dshi_2301at 2432.378 kb on + strand, within Dshi_2301at 2432.393 kb on + strand, within Dshi_2301at 2432.412 kb on - strand, within Dshi_2301at 2432.436 kb on + strand, within Dshi_2301at 2432.444 kb on - strand, within Dshi_2301at 2432.444 kb on - strand, within Dshi_2301at 2432.459 kb on - strand, within Dshi_2301at 2432.487 kb on - strand, within Dshi_2301at 2432.615 kb on + strand, within Dshi_2301at 2432.615 kb on + strand, within Dshi_2301at 2432.623 kb on - strand, within Dshi_2301at 2432.623 kb on - strand, within Dshi_2301at 2432.752 kb on + strandat 2432.769 kb on + strandat 2432.781 kb on + strandat 2432.795 kb on - strandat 2432.804 kb on - strandat 2432.834 kb on + strandat 2432.861 kb on - strandat 2432.919 kb on - strandat 2432.966 kb on + strandat 2433.003 kb on + strandat 2433.034 kb on + strandat 2433.039 kb on + strandat 2433.047 kb on - strandat 2433.118 kb on + strand, within Dshi_2302at 2433.118 kb on + strand, within Dshi_2302at 2433.185 kb on + strand, within Dshi_2302at 2433.188 kb on - strand, within Dshi_2302at 2433.209 kb on - strand, within Dshi_2302at 2433.221 kb on + strand, within Dshi_2302at 2433.339 kb on + strand, within Dshi_2302at 2433.339 kb on + strand, within Dshi_2302at 2433.435 kb on - strandat 2433.468 kb on - strandat 2433.513 kb on - strandat 2433.536 kb on - strand, within Dshi_2303at 2433.611 kb on - strand, within Dshi_2303at 2433.829 kb on - strand, within Dshi_2303at 2433.863 kb on - strand, within Dshi_2303at 2433.885 kb on + strand, within Dshi_2303at 2433.944 kb on + strand, within Dshi_2303at 2433.966 kb on - strand, within Dshi_2303at 2433.995 kb on - strand, within Dshi_2303at 2433.997 kb on + strand, within Dshi_2303at 2434.036 kb on - strand, within Dshi_2303at 2434.058 kb on + strand, within Dshi_2303at 2434.058 kb on + strand, within Dshi_2303at 2434.066 kb on - strand, within Dshi_2303at 2434.066 kb on - strand, within Dshi_2303at 2434.121 kb on + strand, within Dshi_2303at 2434.197 kb on - strand, within Dshi_2303at 2434.283 kb on + strand, within Dshi_2303at 2434.329 kb on + strand, within Dshi_2303at 2434.364 kb on + strand, within Dshi_2303

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,432,085 + Dshi_2300 0.72 -0.0
2,432,085 + Dshi_2300 0.72 +0.3
2,432,103 - Dshi_2300 0.74 +0.1
2,432,109 + Dshi_2300 0.75 +1.0
2,432,109 + Dshi_2300 0.75 +2.0
2,432,147 - Dshi_2300 0.79 +0.2
2,432,159 + Dshi_2300 0.81 -0.8
2,432,166 - Dshi_2300 0.81 +0.4
2,432,168 + Dshi_2300 0.82 +0.8
2,432,176 - Dshi_2300 0.83 -0.1
2,432,178 + Dshi_2300 0.83 +0.1
2,432,183 + Dshi_2300 0.83 -0.8
2,432,195 + Dshi_2300 0.85 +0.7
2,432,195 + Dshi_2300 0.85 -0.2
2,432,195 + Dshi_2300 0.85 +0.1
2,432,207 + Dshi_2300 0.86 +1.7
2,432,213 - Dshi_2300 0.87 -0.9
2,432,213 - Dshi_2300 0.87 +0.6
2,432,215 + Dshi_2300 0.87 +0.3
2,432,225 + Dshi_2300 0.89 -2.5
2,432,233 - Dshi_2300 0.89 +0.7
2,432,233 - Dshi_2300 0.89 -0.3
2,432,372 - Dshi_2301 0.18 +2.3
2,432,378 + Dshi_2301 0.19 -0.0
2,432,393 + Dshi_2301 0.24 -0.7
2,432,412 - Dshi_2301 0.29 -0.3
2,432,436 + Dshi_2301 0.36 -0.5
2,432,444 - Dshi_2301 0.38 +0.6
2,432,444 - Dshi_2301 0.38 +0.7
2,432,459 - Dshi_2301 0.42 +0.3
2,432,487 - Dshi_2301 0.50 +0.3
2,432,615 + Dshi_2301 0.86 -0.8
2,432,615 + Dshi_2301 0.86 -0.7
2,432,623 - Dshi_2301 0.89 -0.1
2,432,623 - Dshi_2301 0.89 -0.3
2,432,752 + +1.2
2,432,769 + +0.2
2,432,781 + +0.6
2,432,795 - -0.2
2,432,804 - +0.7
2,432,834 + -0.0
2,432,861 - +0.0
2,432,919 - -0.8
2,432,966 + -0.5
2,433,003 + +0.8
2,433,034 + +0.1
2,433,039 + -1.1
2,433,047 - -2.1
2,433,118 + Dshi_2302 0.16 -0.1
2,433,118 + Dshi_2302 0.16 -0.1
2,433,185 + Dshi_2302 0.38 -1.0
2,433,188 - Dshi_2302 0.39 -0.6
2,433,209 - Dshi_2302 0.46 -0.7
2,433,221 + Dshi_2302 0.50 +0.6
2,433,339 + Dshi_2302 0.89 -1.7
2,433,339 + Dshi_2302 0.89 +0.2
2,433,435 - +1.1
2,433,468 - -0.8
2,433,513 - -0.5
2,433,536 - Dshi_2303 0.11 +0.9
2,433,611 - Dshi_2303 0.17 -0.9
2,433,829 - Dshi_2303 0.34 +0.6
2,433,863 - Dshi_2303 0.36 +1.6
2,433,885 + Dshi_2303 0.38 +0.3
2,433,944 + Dshi_2303 0.42 +0.4
2,433,966 - Dshi_2303 0.44 +1.2
2,433,995 - Dshi_2303 0.46 +0.6
2,433,997 + Dshi_2303 0.46 -0.3
2,434,036 - Dshi_2303 0.49 +0.1
2,434,058 + Dshi_2303 0.51 +0.8
2,434,058 + Dshi_2303 0.51 +0.2
2,434,066 - Dshi_2303 0.52 -0.5
2,434,066 - Dshi_2303 0.52 +0.1
2,434,121 + Dshi_2303 0.56 +0.0
2,434,197 - Dshi_2303 0.62 +0.1
2,434,283 + Dshi_2303 0.69 +0.7
2,434,329 + Dshi_2303 0.72 +0.6
2,434,364 + Dshi_2303 0.75 -1.7

Or see this region's nucleotide sequence