Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2184
Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Thallium(I) acetate 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,311,313 | - | +0.9 | |||
2,311,313 | - | -0.9 | |||
2,311,313 | - | -1.4 | |||
2,311,313 | - | +1.0 | |||
2,311,383 | + | -0.0 | |||
2,311,391 | - | -1.0 | |||
2,311,451 | - | +1.5 | |||
2,311,503 | - | -0.5 | |||
2,311,547 | + | -0.7 | |||
2,311,595 | - | Dshi_2184 | 0.13 | -0.2 | |
2,311,646 | - | Dshi_2184 | 0.17 | -1.6 | |
2,311,651 | - | Dshi_2184 | 0.18 | +0.7 | |
2,311,678 | - | Dshi_2184 | 0.20 | -0.3 | |
2,311,731 | + | Dshi_2184 | 0.24 | -1.6 | |
2,311,833 | + | Dshi_2184 | 0.33 | -1.0 | |
2,311,865 | + | Dshi_2184 | 0.35 | -0.4 | |
2,311,897 | - | Dshi_2184 | 0.38 | +0.8 | |
2,312,168 | + | Dshi_2184 | 0.61 | -0.3 | |
2,312,248 | + | Dshi_2184 | 0.67 | -0.2 | |
2,312,487 | + | Dshi_2184 | 0.87 | -0.4 | |
2,312,636 | + | -0.4 | |||
2,312,644 | - | -0.0 | |||
2,312,688 | + | -0.7 | |||
2,312,741 | - | +0.4 | |||
2,312,752 | + | +0.2 | |||
2,312,765 | + | Dshi_2185 | 0.10 | -0.9 | |
2,312,772 | + | Dshi_2185 | 0.11 | +0.3 | |
2,312,802 | + | Dshi_2185 | 0.16 | +1.7 | |
2,312,930 | - | Dshi_2185 | 0.38 | +0.8 | |
2,313,072 | - | Dshi_2185 | 0.63 | +0.6 | |
2,313,159 | + | Dshi_2185 | 0.77 | +0.6 | |
2,313,163 | + | Dshi_2185 | 0.78 | -0.6 | |
2,313,172 | - | Dshi_2185 | 0.80 | +1.1 | |
2,313,264 | - | -0.1 | |||
2,313,274 | - | -0.6 | |||
2,313,292 | - | +0.2 | |||
2,313,332 | - | -1.3 |
Or see this region's nucleotide sequence