Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2079

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2078 and Dshi_2079 are separated by 91 nucleotidesDshi_2079 and Dshi_2080 are separated by 72 nucleotides Dshi_2078: Dshi_2078 - Triose-phosphate isomerase (RefSeq), at 2,198,730 to 2,199,473 _2078 Dshi_2079: Dshi_2079 - transcriptional regulator, LysR family (RefSeq), at 2,199,565 to 2,200,521 _2079 Dshi_2080: Dshi_2080 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 2,200,594 to 2,201,463 _2080 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -3 -2 -1 0 1at 2198.644 kb on - strandat 2199.452 kb on + strandat 2199.467 kb on + strandat 2199.537 kb on + strandat 2199.591 kb on + strandat 2199.647 kb on + strandat 2199.731 kb on - strand, within Dshi_2079at 2199.885 kb on + strandat 2200.065 kb on + strand, within Dshi_2079at 2200.079 kb on - strand, within Dshi_2079at 2200.187 kb on - strand, within Dshi_2079at 2200.246 kb on + strand, within Dshi_2079at 2200.352 kb on + strand, within Dshi_2079at 2200.412 kb on + strand, within Dshi_2079at 2200.435 kb on + strandat 2200.461 kb on + strandat 2201.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,198,644 - -0.7
2,199,452 + -0.4
2,199,467 + +0.3
2,199,537 + -0.3
2,199,591 + +0.3
2,199,647 + -1.2
2,199,731 - Dshi_2079 0.17 -1.7
2,199,885 + +1.0
2,200,065 + Dshi_2079 0.52 -0.0
2,200,079 - Dshi_2079 0.54 -0.8
2,200,187 - Dshi_2079 0.65 -0.2
2,200,246 + Dshi_2079 0.71 -1.4
2,200,352 + Dshi_2079 0.82 -2.9
2,200,412 + Dshi_2079 0.89 -0.9
2,200,435 + -0.9
2,200,461 + -2.0
2,201,514 - -0.5

Or see this region's nucleotide sequence