Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2057 and Dshi_2058 are separated by 4 nucleotides Dshi_2058 and Dshi_2059 overlap by 23 nucleotides Dshi_2059 and Dshi_2060 are separated by 501 nucleotides
Dshi_2057: Dshi_2057 - protein of unknown function DUF1178 (RefSeq), at 2,176,088 to 2,176,564
_2057
Dshi_2058: Dshi_2058 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,176,569 to 2,177,234
_2058
Dshi_2059: Dshi_2059 - hypothetical protein (RefSeq), at 2,177,212 to 2,177,808
_2059
Dshi_2060: Dshi_2060 - Aconitate hydratase (EC 4.2.1.3) (from data) , at 2,178,310 to 2,181,102
_2060
Position (kb)
2177
2178 Strain fitness (log2 ratio)
-2
-1
0
1 at 2176.232 kb on - strand, within Dshi_2057 at 2176.273 kb on + strand, within Dshi_2057 at 2176.284 kb on + strand, within Dshi_2057 at 2176.355 kb on - strand, within Dshi_2057 at 2176.508 kb on + strand, within Dshi_2057 at 2176.563 kb on - strand at 2176.611 kb on + strand at 2176.729 kb on + strand, within Dshi_2058 at 2176.836 kb on + strand, within Dshi_2058 at 2176.928 kb on + strand, within Dshi_2058 at 2177.126 kb on + strand, within Dshi_2058 at 2177.145 kb on + strand, within Dshi_2058 at 2177.172 kb on + strand at 2177.178 kb on + strand at 2177.188 kb on + strand at 2177.250 kb on + strand at 2177.490 kb on + strand, within Dshi_2059 at 2177.494 kb on + strand, within Dshi_2059 at 2177.498 kb on + strand, within Dshi_2059 at 2177.537 kb on - strand, within Dshi_2059 at 2177.542 kb on - strand, within Dshi_2059 at 2177.542 kb on - strand, within Dshi_2059 at 2177.667 kb on + strand, within Dshi_2059 at 2177.737 kb on + strand, within Dshi_2059 at 2177.738 kb on - strand, within Dshi_2059 at 2177.745 kb on - strand, within Dshi_2059 at 2177.881 kb on - strand at 2177.939 kb on + strand at 2177.954 kb on + strand at 2177.987 kb on + strand at 2177.995 kb on - strand at 2178.120 kb on - strand at 2178.275 kb on + strand at 2178.377 kb on - strand at 2178.417 kb on + strand at 2178.496 kb on - strand at 2178.699 kb on + strand, within Dshi_2060 at 2178.797 kb on - strand, within Dshi_2060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 2,176,232 - Dshi_2057 0.30 +0.0 2,176,273 + Dshi_2057 0.39 -2.5 2,176,284 + Dshi_2057 0.41 +0.7 2,176,355 - Dshi_2057 0.56 +0.8 2,176,508 + Dshi_2057 0.88 +0.2 2,176,563 - +0.4 2,176,611 + +0.2 2,176,729 + Dshi_2058 0.24 +0.7 2,176,836 + Dshi_2058 0.40 -0.3 2,176,928 + Dshi_2058 0.54 -1.0 2,177,126 + Dshi_2058 0.84 +0.6 2,177,145 + Dshi_2058 0.86 -0.2 2,177,172 + +0.8 2,177,178 + +0.4 2,177,188 + -1.0 2,177,250 + +0.4 2,177,490 + Dshi_2059 0.47 +0.2 2,177,494 + Dshi_2059 0.47 +0.0 2,177,498 + Dshi_2059 0.48 -2.2 2,177,537 - Dshi_2059 0.54 +0.5 2,177,542 - Dshi_2059 0.55 -0.6 2,177,542 - Dshi_2059 0.55 -0.2 2,177,667 + Dshi_2059 0.76 -0.0 2,177,737 + Dshi_2059 0.88 +0.3 2,177,738 - Dshi_2059 0.88 -1.7 2,177,745 - Dshi_2059 0.89 +0.5 2,177,881 - -1.5 2,177,939 + +0.3 2,177,954 + -1.5 2,177,987 + -0.6 2,177,995 - -1.0 2,178,120 - +0.3 2,178,275 + -0.1 2,178,377 - +0.6 2,178,417 + -0.0 2,178,496 - +1.1 2,178,699 + Dshi_2060 0.14 -0.4 2,178,797 - Dshi_2060 0.17 -0.0
Or see this region's nucleotide sequence