Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1926

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1925 and Dshi_1926 are separated by 87 nucleotidesDshi_1926 and Dshi_1927 are separated by 77 nucleotidesDshi_1927 and Dshi_1928 are separated by 57 nucleotides Dshi_1925: Dshi_1925 - AAA ATPase (RefSeq), at 2,010,233 to 2,012,482 _1925 Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753 _1926 Dshi_1927: Dshi_1927 - putative transaldolase (RefSeq), at 2,014,831 to 2,015,484 _1927 Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249 _1928 Position (kb) 2012 2013 2014 2015Strain fitness (log2 ratio) -1 0 1at 2011.806 kb on - strand, within Dshi_1925at 2011.848 kb on - strand, within Dshi_1925at 2011.888 kb on - strand, within Dshi_1925at 2011.995 kb on + strand, within Dshi_1925at 2012.086 kb on - strand, within Dshi_1925at 2012.232 kb on + strand, within Dshi_1925at 2012.321 kb on - strandat 2012.321 kb on - strandat 2012.380 kb on - strandat 2012.470 kb on - strandat 2012.509 kb on - strandat 2012.548 kb on - strandat 2012.550 kb on - strandat 2014.740 kb on + strandat 2014.773 kb on + strandat 2014.773 kb on + strandat 2014.850 kb on + strandat 2014.985 kb on - strand, within Dshi_1927at 2015.080 kb on - strand, within Dshi_1927at 2015.088 kb on + strand, within Dshi_1927at 2015.257 kb on - strand, within Dshi_1927at 2015.308 kb on - strand, within Dshi_1927at 2015.538 kb on + strandat 2015.546 kb on - strandat 2015.599 kb on + strandat 2015.695 kb on - strand, within Dshi_1928

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,011,806 - Dshi_1925 0.70 +1.5
2,011,848 - Dshi_1925 0.72 +0.3
2,011,888 - Dshi_1925 0.74 -1.0
2,011,995 + Dshi_1925 0.78 +0.2
2,012,086 - Dshi_1925 0.82 -0.7
2,012,232 + Dshi_1925 0.89 +1.0
2,012,321 - -0.6
2,012,321 - +0.5
2,012,380 - +0.0
2,012,470 - -0.0
2,012,509 - +0.8
2,012,548 - +1.0
2,012,550 - +1.0
2,014,740 + +0.1
2,014,773 + -0.1
2,014,773 + +0.4
2,014,850 + +1.4
2,014,985 - Dshi_1927 0.24 +0.5
2,015,080 - Dshi_1927 0.38 +1.7
2,015,088 + Dshi_1927 0.39 -0.5
2,015,257 - Dshi_1927 0.65 -0.7
2,015,308 - Dshi_1927 0.73 -0.0
2,015,538 + +0.5
2,015,546 - -0.5
2,015,599 + -1.2
2,015,695 - Dshi_1928 0.22 -0.6

Or see this region's nucleotide sequence