Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1887 and Dshi_1888 are separated by 97 nucleotides Dshi_1888 and Dshi_1889 overlap by 4 nucleotides Dshi_1889 and Dshi_R0038 are separated by 112 nucleotides Dshi_R0038 and Dshi_1890 overlap by 22 nucleotides
Dshi_1887: Dshi_1887 - ribonuclease D (RefSeq), at 1,964,382 to 1,965,539
_1887
Dshi_1888: Dshi_1888 - phosphoribosylglycinamide formyltransferase (RefSeq), at 1,965,637 to 1,966,230
_1888
Dshi_1889: Dshi_1889 - phosphoribosylformylglycinamidine cyclo-ligase (RefSeq), at 1,966,227 to 1,967,288
_1889
Dshi_R0038: Dshi_R0038 - tRNA-Met (RefSeq), at 1,967,401 to 1,967,477
_R0038
Dshi_1890: Dshi_1890 - Sel1 domain protein repeat-containing protein (RefSeq), at 1,967,456 to 1,968,577
_1890
Position (kb)
1966
1967
1968 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1965.287 kb on - strand, within Dshi_1887 at 1965.316 kb on - strand, within Dshi_1887 at 1965.532 kb on - strand at 1965.810 kb on + strand, within Dshi_1888 at 1965.821 kb on + strand, within Dshi_1888 at 1965.829 kb on - strand, within Dshi_1888 at 1965.859 kb on + strand, within Dshi_1888 at 1966.204 kb on + strand at 1966.391 kb on + strand, within Dshi_1889 at 1966.553 kb on - strand, within Dshi_1889 at 1966.597 kb on + strand, within Dshi_1889 at 1966.635 kb on - strand, within Dshi_1889 at 1966.637 kb on + strand, within Dshi_1889 at 1966.746 kb on + strand, within Dshi_1889 at 1966.892 kb on - strand, within Dshi_1889 at 1967.132 kb on - strand, within Dshi_1889 at 1967.165 kb on - strand, within Dshi_1889 at 1967.176 kb on - strand, within Dshi_1889 at 1967.176 kb on - strand, within Dshi_1889 at 1967.191 kb on + strand at 1967.314 kb on + strand at 1967.574 kb on - strand, within Dshi_1890 at 1967.581 kb on + strand, within Dshi_1890 at 1967.594 kb on + strand, within Dshi_1890 at 1967.602 kb on - strand, within Dshi_1890 at 1967.602 kb on - strand, within Dshi_1890 at 1967.639 kb on + strand, within Dshi_1890 at 1967.670 kb on + strand, within Dshi_1890 at 1967.743 kb on - strand, within Dshi_1890 at 1967.749 kb on - strand, within Dshi_1890 at 1967.878 kb on + strand, within Dshi_1890 at 1967.886 kb on - strand, within Dshi_1890 at 1967.906 kb on + strand, within Dshi_1890 at 1968.040 kb on + strand, within Dshi_1890 at 1968.170 kb on + strand, within Dshi_1890 at 1968.225 kb on + strand, within Dshi_1890 at 1968.232 kb on - strand, within Dshi_1890 at 1968.233 kb on - strand, within Dshi_1890
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,965,287 - Dshi_1887 0.78 +1.4 1,965,316 - Dshi_1887 0.81 +2.6 1,965,532 - +1.5 1,965,810 + Dshi_1888 0.29 +0.6 1,965,821 + Dshi_1888 0.31 +0.1 1,965,829 - Dshi_1888 0.32 +0.3 1,965,859 + Dshi_1888 0.37 -0.2 1,966,204 + +0.3 1,966,391 + Dshi_1889 0.15 +0.6 1,966,553 - Dshi_1889 0.31 -0.4 1,966,597 + Dshi_1889 0.35 -0.3 1,966,635 - Dshi_1889 0.38 -1.4 1,966,637 + Dshi_1889 0.39 -2.4 1,966,746 + Dshi_1889 0.49 -1.3 1,966,892 - Dshi_1889 0.63 +0.3 1,967,132 - Dshi_1889 0.85 -0.1 1,967,165 - Dshi_1889 0.88 -0.8 1,967,176 - Dshi_1889 0.89 -1.2 1,967,176 - Dshi_1889 0.89 -1.5 1,967,191 + -1.1 1,967,314 + -1.7 1,967,574 - Dshi_1890 0.11 +0.7 1,967,581 + Dshi_1890 0.11 -0.6 1,967,594 + Dshi_1890 0.12 +1.5 1,967,602 - Dshi_1890 0.13 -0.7 1,967,602 - Dshi_1890 0.13 -1.1 1,967,639 + Dshi_1890 0.16 -2.4 1,967,670 + Dshi_1890 0.19 +1.8 1,967,743 - Dshi_1890 0.26 +0.4 1,967,749 - Dshi_1890 0.26 -2.0 1,967,878 + Dshi_1890 0.38 -1.2 1,967,886 - Dshi_1890 0.38 +1.4 1,967,906 + Dshi_1890 0.40 -2.5 1,968,040 + Dshi_1890 0.52 +0.4 1,968,170 + Dshi_1890 0.64 +0.8 1,968,225 + Dshi_1890 0.69 +0.3 1,968,232 - Dshi_1890 0.69 -0.4 1,968,233 - Dshi_1890 0.69 -0.5
Or see this region's nucleotide sequence