Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1846 and Dshi_1847 are separated by 98 nucleotides Dshi_1847 and Dshi_1848 overlap by 26 nucleotides Dshi_1848 and Dshi_1849 overlap by 11 nucleotides Dshi_1849 and Dshi_1850 are separated by 9 nucleotides Dshi_1850 and Dshi_1851 are separated by 222 nucleotides
Dshi_1846: Dshi_1846 - hypothetical protein (RefSeq), at 1,927,300 to 1,927,743
_1846
Dshi_1847: Dshi_1847 - hypothetical protein (RefSeq), at 1,927,842 to 1,928,210
_1847
Dshi_1848: Dshi_1848 - putative ScnA-like protein (RefSeq), at 1,928,185 to 1,928,493
_1848
Dshi_1849: Dshi_1849 - Nitrile hydratase (RefSeq), at 1,928,483 to 1,929,094
_1849
Dshi_1850: Dshi_1850 - protein of unknown function DUF1223 (RefSeq), at 1,929,104 to 1,929,808
_1850
Dshi_1851: Dshi_1851 - aconitate hydratase 1 (RefSeq), at 1,930,031 to 1,932,817
_1851
Position (kb)
1928
1929
1930 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1927.622 kb on - strand, within Dshi_1846 at 1927.670 kb on + strand, within Dshi_1846 at 1927.678 kb on - strand, within Dshi_1846 at 1927.723 kb on - strand at 1927.761 kb on + strand at 1927.852 kb on + strand at 1927.921 kb on + strand, within Dshi_1847 at 1927.929 kb on - strand, within Dshi_1847 at 1928.238 kb on + strand, within Dshi_1848 at 1928.336 kb on - strand, within Dshi_1848 at 1928.348 kb on + strand, within Dshi_1848 at 1928.349 kb on - strand, within Dshi_1848 at 1928.409 kb on - strand, within Dshi_1848 at 1928.409 kb on - strand, within Dshi_1848 at 1928.431 kb on + strand, within Dshi_1848 at 1928.476 kb on - strand at 1928.542 kb on - strand at 1928.542 kb on - strand at 1928.682 kb on + strand, within Dshi_1849 at 1928.682 kb on + strand, within Dshi_1849 at 1928.795 kb on - strand, within Dshi_1849 at 1928.941 kb on + strand, within Dshi_1849 at 1928.955 kb on - strand, within Dshi_1849 at 1929.173 kb on + strand at 1929.222 kb on - strand, within Dshi_1850 at 1929.296 kb on - strand, within Dshi_1850 at 1929.444 kb on + strand, within Dshi_1850 at 1929.507 kb on - strand, within Dshi_1850 at 1929.630 kb on - strand, within Dshi_1850 at 1929.667 kb on + strand, within Dshi_1850 at 1929.833 kb on + strand at 1929.893 kb on + strand at 1929.898 kb on + strand at 1929.901 kb on - strand at 1929.952 kb on - strand at 1930.012 kb on - strand at 1930.036 kb on + strand at 1930.044 kb on - strand at 1930.066 kb on - strand at 1930.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,927,622 - Dshi_1846 0.73 +0.8 1,927,670 + Dshi_1846 0.83 +1.2 1,927,678 - Dshi_1846 0.85 -0.2 1,927,723 - +1.0 1,927,761 + +1.2 1,927,852 + +1.2 1,927,921 + Dshi_1847 0.21 -0.9 1,927,929 - Dshi_1847 0.24 +0.4 1,928,238 + Dshi_1848 0.17 +1.0 1,928,336 - Dshi_1848 0.49 +1.4 1,928,348 + Dshi_1848 0.53 -0.3 1,928,349 - Dshi_1848 0.53 +1.1 1,928,409 - Dshi_1848 0.72 -1.3 1,928,409 - Dshi_1848 0.72 +0.1 1,928,431 + Dshi_1848 0.80 +0.6 1,928,476 - +0.8 1,928,542 - -0.5 1,928,542 - +0.4 1,928,682 + Dshi_1849 0.33 -2.1 1,928,682 + Dshi_1849 0.33 -2.9 1,928,795 - Dshi_1849 0.51 -0.0 1,928,941 + Dshi_1849 0.75 -1.1 1,928,955 - Dshi_1849 0.77 -1.0 1,929,173 + +2.0 1,929,222 - Dshi_1850 0.17 +2.9 1,929,296 - Dshi_1850 0.27 +2.3 1,929,444 + Dshi_1850 0.48 +3.1 1,929,507 - Dshi_1850 0.57 +2.9 1,929,630 - Dshi_1850 0.75 +1.5 1,929,667 + Dshi_1850 0.80 +3.4 1,929,833 + +1.8 1,929,893 + -0.1 1,929,898 + +0.7 1,929,901 - +0.4 1,929,952 - +0.3 1,930,012 - -0.4 1,930,036 + -0.1 1,930,044 - -0.3 1,930,066 - -0.3 1,930,078 + -0.0
Or see this region's nucleotide sequence